miRNA display CGI


Results 1 - 20 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 128063 1.13 0.000594
Target:  5'- uCCUACAACUGGCCCGGGCGGCUCGCCg -3'
miRNA:   3'- -GGAUGUUGACCGGGCCCGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 31145 0.86 0.043612
Target:  5'- uUCUGCGGCUGGCCuucgCGGGCGGCgucgaCGCCg -3'
miRNA:   3'- -GGAUGUUGACCGG----GCCCGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 89319 0.86 0.048461
Target:  5'- cCCaGCGAgUGGCCCGGGCGGCagcuccCGCCg -3'
miRNA:   3'- -GGaUGUUgACCGGGCCCGCCGa-----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 100818 0.83 0.075588
Target:  5'- aUUGCGGCcgaccucGGCCCGGGCGGCUCcgGCCa -3'
miRNA:   3'- gGAUGUUGa------CCGGGCCCGCCGAG--CGG- -5'
6351 3' -60.4 NC_001847.1 + 21362 0.81 0.108354
Target:  5'- gCCgucgGCGGCUcgGGCCgccuCGGGCGGCUCGUCa -3'
miRNA:   3'- -GGa---UGUUGA--CCGG----GCCCGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 69890 0.8 0.123007
Target:  5'- aCCgGCcGCgGGCCCGGGUGGCggaaaagCGCCg -3'
miRNA:   3'- -GGaUGuUGaCCGGGCCCGCCGa------GCGG- -5'
6351 3' -60.4 NC_001847.1 + 88931 0.79 0.136032
Target:  5'- cCCcGCGGCcGGCCCGgcGGCGGC-CGCCg -3'
miRNA:   3'- -GGaUGUUGaCCGGGC--CCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 118470 0.78 0.161908
Target:  5'- gCCUGCGGCgcaaGGCCCGGGCGcGCcuguaggCGCg -3'
miRNA:   3'- -GGAUGUUGa---CCGGGCCCGC-CGa------GCGg -5'
6351 3' -60.4 NC_001847.1 + 55443 0.78 0.165949
Target:  5'- uCCUGCAGCgccUGGCgCCGGcGgGGCgcgCGCCg -3'
miRNA:   3'- -GGAUGUUG---ACCG-GGCC-CgCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 33963 0.78 0.170079
Target:  5'- cCCgaGCGcGCUGGCgCCGGGCGcGCUgGCCg -3'
miRNA:   3'- -GGa-UGU-UGACCG-GGCCCGC-CGAgCGG- -5'
6351 3' -60.4 NC_001847.1 + 43641 0.78 0.170079
Target:  5'- gCUGCAggacgcgcGCgagGGCUCGGGUGGCcCGCCg -3'
miRNA:   3'- gGAUGU--------UGa--CCGGGCCCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 33494 0.77 0.178616
Target:  5'- uCCgcgGCGGC-GGCgCGGGCGGCggcgggCGCCg -3'
miRNA:   3'- -GGa--UGUUGaCCGgGCCCGCCGa-----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 107420 0.77 0.192134
Target:  5'- gCC-ACAGCUcGGCCagcucggcgCGGGCGGCcCGCCg -3'
miRNA:   3'- -GGaUGUUGA-CCGG---------GCCCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 4607 0.77 0.192134
Target:  5'- gCC-ACAGCUcGGCCagcucggcgCGGGCGGCcCGCCg -3'
miRNA:   3'- -GGaUGUUGA-CCGG---------GCCCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 49056 0.77 0.196836
Target:  5'- --cGCAGCUcacGGCCgCGGGCGGCggcaGCCg -3'
miRNA:   3'- ggaUGUUGA---CCGG-GCCCGCCGag--CGG- -5'
6351 3' -60.4 NC_001847.1 + 125561 0.76 0.206047
Target:  5'- gCUGCGGCUcgaucgcGGCCgCGGGCGGCggGCUg -3'
miRNA:   3'- gGAUGUUGA-------CCGG-GCCCGCCGagCGG- -5'
6351 3' -60.4 NC_001847.1 + 105684 0.76 0.206542
Target:  5'- gCCgcggGCGGCgcuucGGCCgCGGGCGGCgccaCGCCc -3'
miRNA:   3'- -GGa---UGUUGa----CCGG-GCCCGCCGa---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 54383 0.76 0.206542
Target:  5'- gCUGCGGCgggcGGCCgCGGGCgaGGCgggCGCCg -3'
miRNA:   3'- gGAUGUUGa---CCGG-GCCCG--CCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 80806 0.76 0.206542
Target:  5'- gUUGC-GCUGGUCCGGGCGcGUgaggCGCCg -3'
miRNA:   3'- gGAUGuUGACCGGGCCCGC-CGa---GCGG- -5'
6351 3' -60.4 NC_001847.1 + 73 0.76 0.211548
Target:  5'- --cGCGGCgGGCCCGGGCccgcucugGGCUcCGCCc -3'
miRNA:   3'- ggaUGUUGaCCGGGCCCG--------CCGA-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.