miRNA display CGI


Results 1 - 20 of 517 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 135135 0.67 0.679305
Target:  5'- --cGCAGggGGCCCGcGCGGCgcggCGCg -3'
miRNA:   3'- ggaUGUUgaCCGGGCcCGCCGa---GCGg -5'
6351 3' -60.4 NC_001847.1 + 135068 0.7 0.45736
Target:  5'- gCCcAgAGCgGGCCCGGGCccGCcgCGCCg -3'
miRNA:   3'- -GGaUgUUGaCCGGGCCCGc-CGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 134920 0.66 0.689129
Target:  5'- --cGCGA--GGCCCGGGCucgGGCccccgggCGCCg -3'
miRNA:   3'- ggaUGUUgaCCGGGCCCG---CCGa------GCGG- -5'
6351 3' -60.4 NC_001847.1 + 134367 0.66 0.715409
Target:  5'- --gACGACgaGGCCggcgccgccggcggCGGGcCGGCcUCGCCc -3'
miRNA:   3'- ggaUGUUGa-CCGG--------------GCCC-GCCG-AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 134258 0.67 0.629794
Target:  5'- gCCgcgGCGGCcccGGCgCGGGCcGC-CGCCg -3'
miRNA:   3'- -GGa--UGUUGa--CCGgGCCCGcCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 134120 0.73 0.327618
Target:  5'- gCUGCGGC-GcGCCgCGGGCGGCg-GCCu -3'
miRNA:   3'- gGAUGUUGaC-CGG-GCCCGCCGagCGG- -5'
6351 3' -60.4 NC_001847.1 + 134027 0.7 0.45736
Target:  5'- gCUGguGCUGGaggCCGcGGCGGCgcCGCCc -3'
miRNA:   3'- gGAUguUGACCg--GGC-CCGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 133999 0.69 0.51265
Target:  5'- --cGCGGCaucGGCaguacagucaCGGGCGGuCUCGCCa -3'
miRNA:   3'- ggaUGUUGa--CCGg---------GCCCGCC-GAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 133904 0.76 0.227196
Target:  5'- gCUGCGGCcgguguaccUGGCCugCGGGCGGCgcgCGCUg -3'
miRNA:   3'- gGAUGUUG---------ACCGG--GCCCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 133598 0.67 0.649645
Target:  5'- gCUAUcgGGCgggcgGGCuuGGGCGGCacaagCGCg -3'
miRNA:   3'- gGAUG--UUGa----CCGggCCCGCCGa----GCGg -5'
6351 3' -60.4 NC_001847.1 + 133594 0.73 0.320473
Target:  5'- gCCUcGCGGCgcgucuucGGCCCGGGCGccuucGCgcgCGCCg -3'
miRNA:   3'- -GGA-UGUUGa-------CCGGGCCCGC-----CGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 133551 0.73 0.327618
Target:  5'- gCC-GCGcGCUGGCCCGaGCGGCgCGCUg -3'
miRNA:   3'- -GGaUGU-UGACCGGGCcCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 133409 0.74 0.306536
Target:  5'- aCCUcugcgcGCGGCUGGCCgCGGcGCGGCggCGgCu -3'
miRNA:   3'- -GGA------UGUUGACCGG-GCC-CGCCGa-GCgG- -5'
6351 3' -60.4 NC_001847.1 + 133300 0.67 0.649645
Target:  5'- --cACGcCUGGgCCGGGCgcuggacgGGCgCGCCg -3'
miRNA:   3'- ggaUGUuGACCgGGCCCG--------CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 133209 0.66 0.698909
Target:  5'- gCgcCGGC-GGCCCGaGUGGC-CGCCg -3'
miRNA:   3'- gGauGUUGaCCGGGCcCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 133177 0.69 0.560722
Target:  5'- aCCUGC-GCgGGCgCGGGCuGCccUCGCUg -3'
miRNA:   3'- -GGAUGuUGaCCGgGCCCGcCG--AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 133156 0.7 0.49389
Target:  5'- cUCUACGACccgcuGCCCGGGgaGGCgcuggcggCGCCg -3'
miRNA:   3'- -GGAUGUUGac---CGGGCCCg-CCGa-------GCGG- -5'
6351 3' -60.4 NC_001847.1 + 133052 0.7 0.484628
Target:  5'- cCCgccGCcGCgcgGGCCCcgcgGGGC-GCUCGCCg -3'
miRNA:   3'- -GGa--UGuUGa--CCGGG----CCCGcCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 132943 0.7 0.484628
Target:  5'- gCCUACuGCcgccccgaGGUCgCGGcGCGGCUCGCg -3'
miRNA:   3'- -GGAUGuUGa-------CCGG-GCC-CGCCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 132790 0.7 0.49389
Target:  5'- gCCgacGCGGCcGGgCCGGcGCGGCgggagcCGCCg -3'
miRNA:   3'- -GGa--UGUUGaCCgGGCC-CGCCGa-----GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.