miRNA display CGI


Results 21 - 40 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 132596 0.66 0.708636
Target:  5'- --gGCcGCcccGGCCC-GGCGGCgggagCGCCg -3'
miRNA:   3'- ggaUGuUGa--CCGGGcCCGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 132540 0.66 0.718302
Target:  5'- aCCUccggcGCGGCgGGCUCGcGuGCGGC-CGCg -3'
miRNA:   3'- -GGA-----UGUUGaCCGGGC-C-CGCCGaGCGg -5'
6351 3' -60.4 NC_001847.1 + 132374 0.66 0.727898
Target:  5'- gCCgcCGGCgggGGCgCCGGcGcCGGCgcCGCCg -3'
miRNA:   3'- -GGauGUUGa--CCG-GGCC-C-GCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 132163 0.72 0.357367
Target:  5'- gCUcCAGCgcgcGGCCCcGGCGGCgcugcgCGCCg -3'
miRNA:   3'- gGAuGUUGa---CCGGGcCCGCCGa-----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 131972 0.7 0.484628
Target:  5'- gCCUGCcGCgaGGCgCUGgaGGCGGCcCGCCg -3'
miRNA:   3'- -GGAUGuUGa-CCG-GGC--CCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 131901 0.7 0.46636
Target:  5'- cCCUGCcgccGGCgagcacGGCgCGGGCGGCgCGCg -3'
miRNA:   3'- -GGAUG----UUGa-----CCGgGCCCGCCGaGCGg -5'
6351 3' -60.4 NC_001847.1 + 131828 0.69 0.550993
Target:  5'- gCCggcgGCAGCgGcGCCCGcGcCGcGCUCGCCg -3'
miRNA:   3'- -GGa---UGUUGaC-CGGGCcC-GC-CGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 131775 0.66 0.708636
Target:  5'- uCCUGCAGa--GCCUGcGGCGcGCguaCGCCc -3'
miRNA:   3'- -GGAUGUUgacCGGGC-CCGC-CGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 131725 0.71 0.413825
Target:  5'- gCUGCGcCUGGCCCcccGGGCuGCUCuCCc -3'
miRNA:   3'- gGAUGUuGACCGGG---CCCGcCGAGcGG- -5'
6351 3' -60.4 NC_001847.1 + 131578 0.7 0.47545
Target:  5'- aCCUGCAGCUGGCgCGccugcugcaGCGGCgcgUGCa -3'
miRNA:   3'- -GGAUGUUGACCGgGCc--------CGCCGa--GCGg -5'
6351 3' -60.4 NC_001847.1 + 131454 0.66 0.737417
Target:  5'- gCCUACcugugguGCgcgcaGGCUCGcGGCGGCcUGCUg -3'
miRNA:   3'- -GGAUGu------UGa----CCGGGC-CCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 131365 0.66 0.689129
Target:  5'- uCgUGCAGCacaucccGCCCGGGCuGCUCGaCg -3'
miRNA:   3'- -GgAUGUUGac-----CGGGCCCGcCGAGCgG- -5'
6351 3' -60.4 NC_001847.1 + 131312 0.68 0.609948
Target:  5'- gCCUucugGCGagGCgUGGCCCGGcaGCGcGC-CGCCg -3'
miRNA:   3'- -GGA----UGU--UG-ACCGGGCC--CGC-CGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 131188 0.69 0.51265
Target:  5'- aCCUcGC-GCUGGCgCUguGGGuCGcGCUCGCCg -3'
miRNA:   3'- -GGA-UGuUGACCG-GG--CCC-GC-CGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 131002 0.66 0.698909
Target:  5'- aCUGCAGCgaugccgGGCCCGaggacgauGGgGGCgagGCCc -3'
miRNA:   3'- gGAUGUUGa------CCGGGC--------CCgCCGag-CGG- -5'
6351 3' -60.4 NC_001847.1 + 130953 0.67 0.649645
Target:  5'- gCCUGCGcGC-GGCCCacGGGCGcGCg-GCCc -3'
miRNA:   3'- -GGAUGU-UGaCCGGG--CCCGC-CGagCGG- -5'
6351 3' -60.4 NC_001847.1 + 130796 0.66 0.708636
Target:  5'- --gGCGGCcgcGGCCgGGGCGGaggCgGCCg -3'
miRNA:   3'- ggaUGUUGa--CCGGgCCCGCCga-G-CGG- -5'
6351 3' -60.4 NC_001847.1 + 130752 0.66 0.708636
Target:  5'- --gACAGCgccugGGCCgCGGcGCGcgcGCUCGCg -3'
miRNA:   3'- ggaUGUUGa----CCGG-GCC-CGC---CGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 129449 0.7 0.503232
Target:  5'- aCCUGaacuGCcgGGUCUGGGCGGCcccgGCCg -3'
miRNA:   3'- -GGAUgu--UGa-CCGGGCCCGCCGag--CGG- -5'
6351 3' -60.4 NC_001847.1 + 129324 0.67 0.669445
Target:  5'- gCCUGCcgGGCgcgGGgCCGGGgGcGUUCgGCCa -3'
miRNA:   3'- -GGAUG--UUGa--CCgGGCCCgC-CGAG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.