miRNA display CGI


Results 41 - 60 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 3930 0.72 0.357367
Target:  5'- --cACAgcGCUGGCagCGGGCGGCgagCGCg -3'
miRNA:   3'- ggaUGU--UGACCGg-GCCCGCCGa--GCGg -5'
6351 3' -60.4 NC_001847.1 + 119247 0.74 0.299743
Target:  5'- gCUGgGACUGauuauggcggcGCCCGcGCGGCUCGUCg -3'
miRNA:   3'- gGAUgUUGAC-----------CGGGCcCGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 21362 0.81 0.108354
Target:  5'- gCCgucgGCGGCUcgGGCCgccuCGGGCGGCUCGUCa -3'
miRNA:   3'- -GGa---UGUUGA--CCGG----GCCCGCCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 115697 0.73 0.349755
Target:  5'- --aGCGGCUGGCCCGGcaGCGgGCgCGCg -3'
miRNA:   3'- ggaUGUUGACCGGGCC--CGC-CGaGCGg -5'
6351 3' -60.4 NC_001847.1 + 100818 0.83 0.075588
Target:  5'- aUUGCGGCcgaccucGGCCCGGGCGGCUCcgGCCa -3'
miRNA:   3'- gGAUGUUGa------CCGGGCCCGCCGAG--CGG- -5'
6351 3' -60.4 NC_001847.1 + 135068 0.7 0.45736
Target:  5'- gCCcAgAGCgGGCCCGGGCccGCcgCGCCg -3'
miRNA:   3'- -GGaUgUUGaCCGGGCCCGc-CGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 33963 0.78 0.170079
Target:  5'- cCCgaGCGcGCUGGCgCCGGGCGcGCUgGCCg -3'
miRNA:   3'- -GGa-UGU-UGACCG-GGCCCGC-CGAgCGG- -5'
6351 3' -60.4 NC_001847.1 + 38011 0.71 0.448454
Target:  5'- aUCUGCAGCUcGCgCGGGUgcugugGGCgcgCGCCg -3'
miRNA:   3'- -GGAUGUUGAcCGgGCCCG------CCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 55490 0.71 0.43877
Target:  5'- cCCUgcuauggGCGACgugGGCCCugcugcuGGCGGCgccCGCCg -3'
miRNA:   3'- -GGA-------UGUUGa--CCGGGc------CCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 113435 0.71 0.419766
Target:  5'- cCCUGCuggcGCUGGUccuccggcuccucgCCGGGCucCUCGCCa -3'
miRNA:   3'- -GGAUGu---UGACCG--------------GGCCCGccGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 20035 0.71 0.41298
Target:  5'- cCCUGCGGCcgccGCCCuGGGCGcgggcaaaaaugcGCUCGCUg -3'
miRNA:   3'- -GGAUGUUGac--CGGG-CCCGC-------------CGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 78069 0.72 0.388959
Target:  5'- gCCacgACGGCgcagGaGUCCGGGCGGCg-GCCg -3'
miRNA:   3'- -GGa--UGUUGa---C-CGGGCCCGCCGagCGG- -5'
6351 3' -60.4 NC_001847.1 + 76702 0.72 0.365094
Target:  5'- gCUGCGGCUGGaaauggCCGacGGCGaGCUCGUCg -3'
miRNA:   3'- gGAUGUUGACCg-----GGC--CCGC-CGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 56858 0.73 0.342259
Target:  5'- gUCUGCGcccgGC-GGCCCGGGCgcggccacgGGCcCGCCg -3'
miRNA:   3'- -GGAUGU----UGaCCGGGCCCG---------CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 134120 0.73 0.327618
Target:  5'- gCUGCGGC-GcGCCgCGGGCGGCg-GCCu -3'
miRNA:   3'- gGAUGUUGaC-CGG-GCCCGCCGagCGG- -5'
6351 3' -60.4 NC_001847.1 + 80831 0.73 0.313446
Target:  5'- gCC-GCGACUGGgggggcagaUCCGGGCGGCggCGCg -3'
miRNA:   3'- -GGaUGUUGACC---------GGGCCCGCCGa-GCGg -5'
6351 3' -60.4 NC_001847.1 + 36368 0.74 0.306536
Target:  5'- --cGCGGCgccgccgcGGCCCGGGCaGCgcgCGCCg -3'
miRNA:   3'- ggaUGUUGa-------CCGGGCCCGcCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 105555 0.74 0.293067
Target:  5'- aCCgGCccCcGGCCCGGcGCGGCggCGCCg -3'
miRNA:   3'- -GGaUGuuGaCCGGGCC-CGCCGa-GCGG- -5'
6351 3' -60.4 NC_001847.1 + 133904 0.76 0.227196
Target:  5'- gCUGCGGCcgguguaccUGGCCugCGGGCGGCgcgCGCUg -3'
miRNA:   3'- gGAUGUUG---------ACCGG--GCCCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 49056 0.77 0.196836
Target:  5'- --cGCAGCUcacGGCCgCGGGCGGCggcaGCCg -3'
miRNA:   3'- ggaUGUUGA---CCGG-GCCCGCCGag--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.