miRNA display CGI


Results 41 - 60 of 517 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6351 3' -60.4 NC_001847.1 + 117326 0.66 0.737417
Target:  5'- aCCUaGCGGCgGG---GGGCGGCcUCGCCc -3'
miRNA:   3'- -GGA-UGUUGaCCgggCCCGCCG-AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 22084 0.66 0.737417
Target:  5'- uCCgaaaAGCgGGCCC-GGCaGGCgCGCCg -3'
miRNA:   3'- -GGaug-UUGaCCGGGcCCG-CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 34495 0.66 0.737417
Target:  5'- gCCgcaGCAGCgcGGCCCuGGCgccgcagccaGGCggUCGCCa -3'
miRNA:   3'- -GGa--UGUUGa-CCGGGcCCG----------CCG--AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 115883 0.66 0.737417
Target:  5'- gCUGCGccGCcGGCUCGcgccgcuuGGcCGGCUCGCg -3'
miRNA:   3'- gGAUGU--UGaCCGGGC--------CC-GCCGAGCGg -5'
6351 3' -60.4 NC_001847.1 + 131454 0.66 0.737417
Target:  5'- gCCUACcugugguGCgcgcaGGCUCGcGGCGGCcUGCUg -3'
miRNA:   3'- -GGAUGu------UGa----CCGGGC-CCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 46802 0.66 0.727898
Target:  5'- gCUACGGCagacgagcacaGGCCCGcGCGGCUaaaGCg -3'
miRNA:   3'- gGAUGUUGa----------CCGGGCcCGCCGAg--CGg -5'
6351 3' -60.4 NC_001847.1 + 22513 0.66 0.727898
Target:  5'- --gGCGGCggcGGgCCGGGCcGGUcUGCCg -3'
miRNA:   3'- ggaUGUUGa--CCgGGCCCG-CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 31554 0.66 0.715409
Target:  5'- --gACGACgaGGCCggcgccgccggcggCGGGcCGGCcUCGCCc -3'
miRNA:   3'- ggaUGUUGa-CCGG--------------GCCC-GCCG-AGCGG- -5'
6351 3' -60.4 NC_001847.1 + 22118 0.66 0.716374
Target:  5'- --gACAGCgggcgcgcccugGGCCCGgcGGCGGCggcggCGCg -3'
miRNA:   3'- ggaUGUUGa-----------CCGGGC--CCGCCGa----GCGg -5'
6351 3' -60.4 NC_001847.1 + 21767 0.66 0.718302
Target:  5'- gCCgcCGGCgccgGGCCCGGcGCcGGCcgggCGCg -3'
miRNA:   3'- -GGauGUUGa---CCGGGCC-CG-CCGa---GCGg -5'
6351 3' -60.4 NC_001847.1 + 44071 0.66 0.718302
Target:  5'- uCgUGCAGCUGucguGCCUGcuGCGGCgucugCGCCc -3'
miRNA:   3'- -GgAUGUUGAC----CGGGCc-CGCCGa----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 58196 0.66 0.718302
Target:  5'- gCCUucggcCAGCaGGCgcuCCGGGCGGaucugccCGCCg -3'
miRNA:   3'- -GGAu----GUUGaCCG---GGCCCGCCga-----GCGG- -5'
6351 3' -60.4 NC_001847.1 + 88377 0.66 0.718302
Target:  5'- --cGCGGCggaccGGCCCcgcgcggcGGGCGgGCgCGCCg -3'
miRNA:   3'- ggaUGUUGa----CCGGG--------CCCGC-CGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 35450 0.66 0.718302
Target:  5'- uUUACGGC-GGCCCGcGCcGCgCGCCg -3'
miRNA:   3'- gGAUGUUGaCCGGGCcCGcCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 51541 0.66 0.718302
Target:  5'- --gGCGGCgcccaGGCgUCGGcGCaGCUCGCCa -3'
miRNA:   3'- ggaUGUUGa----CCG-GGCC-CGcCGAGCGG- -5'
6351 3' -60.4 NC_001847.1 + 89028 0.66 0.718302
Target:  5'- cCCUACGACgccgugUGcGCgCUGGGCgacggcauGGCgCGCCg -3'
miRNA:   3'- -GGAUGUUG------AC-CG-GGCCCG--------CCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 132540 0.66 0.718302
Target:  5'- aCCUccggcGCGGCgGGCUCGcGuGCGGC-CGCg -3'
miRNA:   3'- -GGA-----UGUUGaCCGGGC-C-CGCCGaGCGg -5'
6351 3' -60.4 NC_001847.1 + 52396 0.66 0.718302
Target:  5'- uCCgGCAagcGCUccaGCgCGGGCGGCgcgCGCUg -3'
miRNA:   3'- -GGaUGU---UGAc--CGgGCCCGCCGa--GCGG- -5'
6351 3' -60.4 NC_001847.1 + 121033 0.66 0.718302
Target:  5'- cCCgugACGA--GGUgCGGGUGGUcCGCCa -3'
miRNA:   3'- -GGa--UGUUgaCCGgGCCCGCCGaGCGG- -5'
6351 3' -60.4 NC_001847.1 + 112108 0.66 0.727898
Target:  5'- ----gGACUGGCUCGaGCGGCgcgugGCCg -3'
miRNA:   3'- ggaugUUGACCGGGCcCGCCGag---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.