miRNA display CGI


Results 61 - 80 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 135078 0.67 0.837028
Target:  5'- gGCCCgggcccGCCGCGccgaaauUUcCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGC-------AA-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131185 0.67 0.854023
Target:  5'- cGCCC-UCgccGCCggagACGg-CGCCCCCc -3'
miRNA:   3'- aCGGGaAGaaaCGG----UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 122649 0.67 0.837857
Target:  5'- gGCCCggguUCUUgGCCGCcccCGCCgCCa -3'
miRNA:   3'- aCGGGa---AGAAaCGGUGcaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 15602 0.67 0.846039
Target:  5'- aGCCCUUCgacuCCucaaaauacgGCGgaacgaCGCCCCCg -3'
miRNA:   3'- aCGGGAAGaaacGG----------UGCaa----GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 80577 0.67 0.846039
Target:  5'- aGCCCgcggg-GCCGuCGUccuccgcgcCGCCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGU-GCAa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 83218 0.67 0.846039
Target:  5'- cGCCCcg----GCCACGaUCGCCgugagCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaAGCGG-----GGG- -5'
6352 5' -56 NC_001847.1 + 6963 0.67 0.846039
Target:  5'- cGCCC-----UGCCGC---CGCCCCCu -3'
miRNA:   3'- aCGGGaagaaACGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101678 0.67 0.846039
Target:  5'- cGCCUcgaagCga-GCCAUGcUCGCCUCCa -3'
miRNA:   3'- aCGGGaa---GaaaCGGUGCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 15878 0.67 0.854023
Target:  5'- gGCCC-UCgacgaGCCGCGcgggCGCCgCCa -3'
miRNA:   3'- aCGGGaAGaaa--CGGUGCaa--GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 17207 0.67 0.854023
Target:  5'- gGCCCagCUcUGCgGCGcuuacgUUGCCCCa -3'
miRNA:   3'- aCGGGaaGAaACGgUGCa-----AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 89638 0.67 0.837857
Target:  5'- cGCCCggCg--GCgGCGccCGCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 127402 0.67 0.837857
Target:  5'- uUGCCCUg----GCCGC---CGCCUCCg -3'
miRNA:   3'- -ACGGGAagaaaCGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 90850 0.67 0.854023
Target:  5'- gGCCCgcCgc-GCCGCGccgCGCCgCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaa-GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 20229 0.67 0.82093
Target:  5'- aGCCCccg--UGCCccaGgggcUCGCCCCCg -3'
miRNA:   3'- aCGGGaagaaACGGug-Ca---AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 29902 0.67 0.82093
Target:  5'- gGCCCUgccggccGCCGCGggggGCCCCUc -3'
miRNA:   3'- aCGGGAagaaa--CGGUGCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 103919 0.67 0.82093
Target:  5'- cGCCCcgCUUUcgcgcGcCCACGccgCGCCCUCa -3'
miRNA:   3'- aCGGGaaGAAA-----C-GGUGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 7123 0.67 0.829485
Target:  5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3'
miRNA:   3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6359 0.67 0.829485
Target:  5'- cGCCCUggUCUgaccGCC-CGcg-GCCCCCu -3'
miRNA:   3'- aCGGGA--AGAaa--CGGuGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 32265 0.67 0.837028
Target:  5'- gGCCCgggcccGCCGCGccgaaauUUcCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGC-------AA-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 91142 0.67 0.837857
Target:  5'- gGCCCUcaaaacuauucUCgcugGCCACGcgCGCCUUa -3'
miRNA:   3'- aCGGGA-----------AGaaa-CGGUGCaaGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.