miRNA display CGI


Results 41 - 60 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 36422 0.66 0.883854
Target:  5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3'
miRNA:   3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5'
6352 5' -56 NC_001847.1 + 36458 0.66 0.883854
Target:  5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3'
miRNA:   3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5'
6352 5' -56 NC_001847.1 + 84898 0.66 0.883854
Target:  5'- cGUCCagCUUcGCCGCGUcgucugccgCGCCCUg -3'
miRNA:   3'- aCGGGaaGAAaCGGUGCAa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 6878 0.66 0.883854
Target:  5'- cGCCUUgcgcUUUUGCauUugGcUCGCCCCUg -3'
miRNA:   3'- aCGGGAa---GAAACG--GugCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 80685 0.66 0.883854
Target:  5'- cGCCCUccuccUCgg-GCU-CGUcccCGCCCCCc -3'
miRNA:   3'- aCGGGA-----AGaaaCGGuGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131192 0.66 0.883854
Target:  5'- cGCgCUggcgCUguggGUCGCGcUCGCCgCCCg -3'
miRNA:   3'- aCGgGAa---GAaa--CGGUGCaAGCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 18141 0.67 0.826085
Target:  5'- cGCCCaggcgaaaauagCUgcgaucaGCCACGcUCGCCCCa -3'
miRNA:   3'- aCGGGaa----------GAaa-----CGGUGCaAGCGGGGg -5'
6352 5' -56 NC_001847.1 + 78303 0.67 0.827789
Target:  5'- gUGCUCgggcggCUggGCCGCccccuccccgCGCCCCCa -3'
miRNA:   3'- -ACGGGaa----GAaaCGGUGcaa-------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 4383 0.67 0.829485
Target:  5'- -aCUCUUCgacggcGCCACGgUCGCCgCCg -3'
miRNA:   3'- acGGGAAGaaa---CGGUGCaAGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 39906 0.67 0.829485
Target:  5'- cGCCCccgaUCgc-GCCcCGaucgCGCCCCCg -3'
miRNA:   3'- aCGGGa---AGaaaCGGuGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109936 0.67 0.829485
Target:  5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3'
miRNA:   3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109172 0.67 0.829485
Target:  5'- cGCCCUggUCUgaccGCC-CGcg-GCCCCCu -3'
miRNA:   3'- aCGGGA--AGAaa--CGGuGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 66675 0.67 0.82093
Target:  5'- aUGCCCgUCUUcaacccucGCCuccacaGCGggCGCUCCCg -3'
miRNA:   3'- -ACGGGaAGAAa-------CGG------UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 88227 0.67 0.82093
Target:  5'- aGCCCgg----GCC-CGacgCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGuGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 20229 0.67 0.82093
Target:  5'- aGCCCccg--UGCCccaGgggcUCGCCCCCg -3'
miRNA:   3'- aCGGGaagaaACGGug-Ca---AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 29902 0.67 0.82093
Target:  5'- gGCCCUgccggccGCCGCGggggGCCCCUc -3'
miRNA:   3'- aCGGGAagaaa--CGGUGCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 103919 0.67 0.82093
Target:  5'- cGCCCcgCUUUcgcgcGcCCACGccgCGCCCUCa -3'
miRNA:   3'- aCGGGaaGAAA-----C-GGUGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 7123 0.67 0.829485
Target:  5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3'
miRNA:   3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6359 0.67 0.829485
Target:  5'- cGCCCUggUCUgaccGCC-CGcg-GCCCCCu -3'
miRNA:   3'- aCGGGA--AGAaa--CGGuGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 110375 0.67 0.854023
Target:  5'- cGCUCUUCgacGaCCGCGcgUCGCaCCUCa -3'
miRNA:   3'- aCGGGAAGaaaC-GGUGCa-AGCG-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.