miRNA display CGI


Results 41 - 60 of 192 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 28340 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 28372 0.67 0.854023
Target:  5'- cGCCC-UCgccGCCggagACGg-CGCCCCCc -3'
miRNA:   3'- aCGGGaAGaaaCGG----UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 28970 0.71 0.635473
Target:  5'- aGCCUgcg---GCgCGCGUaCGCCCCCa -3'
miRNA:   3'- aCGGGaagaaaCG-GUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 29902 0.67 0.82093
Target:  5'- gGCCCUgccggccGCCGCGggggGCCCCUc -3'
miRNA:   3'- aCGGGAagaaa--CGGUGCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 29915 0.69 0.756642
Target:  5'- cGCCCgcCUgUGCC-CGcgCGCCCgCg -3'
miRNA:   3'- aCGGGaaGAaACGGuGCaaGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 31210 0.7 0.666394
Target:  5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3'
miRNA:   3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 31373 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 31537 0.7 0.656104
Target:  5'- gUGCCCcaggCgUUUGUCGCGcgcaUGCCCCCg -3'
miRNA:   3'- -ACGGGaa--G-AAACGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 32265 0.67 0.837028
Target:  5'- gGCCCgggcccGCCGCGccgaaauUUcCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGC-------AA-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 32441 0.67 0.854023
Target:  5'- gGCCUUUCgccGCCcgcccgGCGcccUGCCCCCg -3'
miRNA:   3'- aCGGGAAGaaaCGG------UGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 33682 0.73 0.491137
Target:  5'- cGCCCUUgCg--GCCGCGcggcggcaguuuccgCGCCCCCc -3'
miRNA:   3'- aCGGGAA-GaaaCGGUGCaa-------------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 33757 0.68 0.766236
Target:  5'- uUGCCgg-CggcGCCGCGggCaGCCCCCg -3'
miRNA:   3'- -ACGGgaaGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 36278 0.68 0.78505
Target:  5'- aGCgCCUUCggcUUGCCGCacgaaGUUCGCgCgCCg -3'
miRNA:   3'- aCG-GGAAGa--AACGGUG-----CAAGCGgG-GG- -5'
6352 5' -56 NC_001847.1 + 36285 0.7 0.711215
Target:  5'- cGCCCUUCcgggaucugcuggUGCUGCGgaugCGCCUCUa -3'
miRNA:   3'- aCGGGAAGaa-----------ACGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36422 0.66 0.883854
Target:  5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3'
miRNA:   3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5'
6352 5' -56 NC_001847.1 + 36458 0.66 0.883854
Target:  5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3'
miRNA:   3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5'
6352 5' -56 NC_001847.1 + 36902 0.74 0.437695
Target:  5'- cUGCCCcgCc--GCCACGgcgUCGCCUCCu -3'
miRNA:   3'- -ACGGGaaGaaaCGGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 38324 0.73 0.523424
Target:  5'- cGCCCgcgcggUCgccGCCGCuGcgCGCCCCCc -3'
miRNA:   3'- aCGGGa-----AGaaaCGGUG-CaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 38649 0.67 0.854023
Target:  5'- aUGCCCgcCgcgUUGCCGUGgcgaCGCCCgCCg -3'
miRNA:   3'- -ACGGGaaGa--AACGGUGCaa--GCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 39309 0.73 0.513549
Target:  5'- aGCCCg----UGCCugGcUUGCCCCUg -3'
miRNA:   3'- aCGGGaagaaACGGugCaAGCGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.