miRNA display CGI


Results 41 - 60 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 62522 0.69 0.753741
Target:  5'- cGCCCUUU--UGCCcguagccaggggaaGCGgcUGCCCCUu -3'
miRNA:   3'- aCGGGAAGaaACGG--------------UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 15613 0.71 0.614832
Target:  5'- uUGCCCagcCUgccgGCCGCGgccgcCGCCCCUc -3'
miRNA:   3'- -ACGGGaa-GAaa--CGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 99859 0.76 0.36868
Target:  5'- cGCCCacgcaccgUUCUUaUGCCAgCGUUUGCaCCCCg -3'
miRNA:   3'- aCGGG--------AAGAA-ACGGU-GCAAGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 134706 0.69 0.737128
Target:  5'- cGCCgCUgCUgccGCCGCcgcCGCCCCCg -3'
miRNA:   3'- aCGG-GAaGAaa-CGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107142 0.78 0.28665
Target:  5'- gGCCgCUUCg--GCCGCGgcCGCCUCCg -3'
miRNA:   3'- aCGG-GAAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109936 0.67 0.829485
Target:  5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3'
miRNA:   3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36902 0.74 0.437695
Target:  5'- cUGCCCcgCc--GCCACGgcgUCGCCUCCu -3'
miRNA:   3'- -ACGGGaaGaaaCGGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 78303 0.67 0.827789
Target:  5'- gUGCUCgggcggCUggGCCGCccccuccccgCGCCCCCa -3'
miRNA:   3'- -ACGGGaa----GAaaCGGUGcaa-------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 88227 0.67 0.82093
Target:  5'- aGCCCgg----GCC-CGacgCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGuGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109962 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5'
6352 5' -56 NC_001847.1 + 16051 0.68 0.785977
Target:  5'- cGCCCcgCggcgGCCGCGgcgccucugcugggCGCCUCCa -3'
miRNA:   3'- aCGGGaaGaaa-CGGUGCaa------------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 89010 0.68 0.773824
Target:  5'- gGCCCgcuucuaccgaaUCUUUGCCGacauCGcccaGCCCCCg -3'
miRNA:   3'- aCGGGa-----------AGAAACGGU----GCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 29915 0.69 0.756642
Target:  5'- cGCCCgcCUgUGCC-CGcgCGCCCgCg -3'
miRNA:   3'- aCGGGaaGAaACGGuGCaaGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 106270 0.69 0.727226
Target:  5'- cGCCCacagcgcgUUCUgcgcgGCCAUGg-CGUCCCCg -3'
miRNA:   3'- aCGGG--------AAGAaa---CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 87059 0.7 0.69706
Target:  5'- cUGCagCUUCcgcGCgGCGUgCGCCCCCg -3'
miRNA:   3'- -ACGg-GAAGaaaCGgUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 31537 0.7 0.656104
Target:  5'- gUGCCCcaggCgUUUGUCGCGcgcaUGCCCCCg -3'
miRNA:   3'- -ACGGGaa--G-AAACGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134186 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 103520 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 1141 0.72 0.573768
Target:  5'- cGCCCgugaCUguacugccgaUGCCGCGcgCGCUCCCa -3'
miRNA:   3'- aCGGGaa--GAa---------ACGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 39309 0.73 0.513549
Target:  5'- aGCCCg----UGCCugGcUUGCCCCUg -3'
miRNA:   3'- aCGGGaagaaACGGugCaAGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.