miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 31537 0.7 0.656104
Target:  5'- gUGCCCcaggCgUUUGUCGCGcgcaUGCCCCCg -3'
miRNA:   3'- -ACGGGaa--G-AAACGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134186 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 129908 0.72 0.563589
Target:  5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3'
miRNA:   3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 43828 0.75 0.385223
Target:  5'- gGCCgCUUCUUUGCCGCGcuggCGCUgCUg -3'
miRNA:   3'- aCGG-GAAGAAACGGUGCaa--GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 56871 0.69 0.756642
Target:  5'- gGCCCgggCgcgGCCACGg--GCCCgCCg -3'
miRNA:   3'- aCGGGaa-GaaaCGGUGCaagCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 118937 0.7 0.707183
Target:  5'- cGCCCUUCgcagacgGCCGCGagcaGCCCg- -3'
miRNA:   3'- aCGGGAAGaaa----CGGUGCaag-CGGGgg -5'
6352 5' -56 NC_001847.1 + 15613 0.71 0.614832
Target:  5'- uUGCCCagcCUgccgGCCGCGgccgcCGCCCCUc -3'
miRNA:   3'- -ACGGGaa-GAaa--CGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 99859 0.76 0.36868
Target:  5'- cGCCCacgcaccgUUCUUaUGCCAgCGUUUGCaCCCCg -3'
miRNA:   3'- aCGGG--------AAGAA-ACGGU-GCAAGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 87059 0.7 0.69706
Target:  5'- cUGCagCUUCcgcGCgGCGUgCGCCCCCg -3'
miRNA:   3'- -ACGg-GAAGaaaCGgUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107142 0.78 0.28665
Target:  5'- gGCCgCUUCg--GCCGCGgcCGCCUCCg -3'
miRNA:   3'- aCGG-GAAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 130151 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 66285 0.7 0.666394
Target:  5'- gGCCCggCgcacgccGCCGCGcUCGCgCCCg -3'
miRNA:   3'- aCGGGaaGaaa----CGGUGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 103520 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 1141 0.72 0.573768
Target:  5'- cGCCCgugaCUguacugccgaUGCCGCGcgCGCUCCCa -3'
miRNA:   3'- aCGGGaa--GAa---------ACGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 39309 0.73 0.513549
Target:  5'- aGCCCg----UGCCugGcUUGCCCCUg -3'
miRNA:   3'- aCGGGaagaaACGGugCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36902 0.74 0.437695
Target:  5'- cUGCCCcgCc--GCCACGgcgUCGCCUCCu -3'
miRNA:   3'- -ACGGGaaGaaaCGGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 89010 0.68 0.773824
Target:  5'- gGCCCgcuucuaccgaaUCUUUGCCGacauCGcccaGCCCCCg -3'
miRNA:   3'- aCGGGa-----------AGAAACGGU----GCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 29915 0.69 0.756642
Target:  5'- cGCCCgcCUgUGCC-CGcgCGCCCgCg -3'
miRNA:   3'- aCGGGaaGAaACGGuGCaaGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 113028 0.69 0.727226
Target:  5'- gGCCCagggCgc-GCC-CGcugUCGCCCCCg -3'
miRNA:   3'- aCGGGaa--GaaaCGGuGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36285 0.7 0.711215
Target:  5'- cGCCCUUCcgggaucugcuggUGCUGCGgaugCGCCUCUa -3'
miRNA:   3'- aCGGGAAGaa-----------ACGGUGCaa--GCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.