miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 64428 0.78 0.266927
Target:  5'- cUGUCCUcgCgcucGCCGCGggCGCCCCCg -3'
miRNA:   3'- -ACGGGAa-Gaaa-CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 130271 0.69 0.727226
Target:  5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3'
miRNA:   3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 106270 0.69 0.727226
Target:  5'- cGCCCacagcgcgUUCUgcgcgGCCAUGg-CGUCCCCg -3'
miRNA:   3'- aCGGG--------AAGAaa---CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 104162 0.71 0.62515
Target:  5'- cGCCCUgcgCg--GCCAUGUccUUGCgCCCg -3'
miRNA:   3'- aCGGGAa--GaaaCGGUGCA--AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 131153 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 120681 0.69 0.759532
Target:  5'- aGCCCggagacccagagGCCGCGgccgCGCaCCCCg -3'
miRNA:   3'- aCGGGaagaaa------CGGUGCaa--GCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 134706 0.69 0.737128
Target:  5'- cGCCgCUgCUgccGCCGCcgcCGCCCCCg -3'
miRNA:   3'- aCGG-GAaGAaa-CGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 38324 0.73 0.523424
Target:  5'- cGCCCgcgcggUCgccGCCGCuGcgCGCCCCCc -3'
miRNA:   3'- aCGGGa-----AGaaaCGGUG-CaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134023 0.7 0.666394
Target:  5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3'
miRNA:   3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 31537 0.7 0.656104
Target:  5'- gUGCCCcaggCgUUUGUCGCGcgcaUGCCCCCg -3'
miRNA:   3'- -ACGGGaa--G-AAACGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 55568 0.74 0.474867
Target:  5'- cGCCCgaagagGCCGCGagcccggCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa-----GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 118493 0.74 0.456077
Target:  5'- cGCCCgcgcc-GCCACGUUCGCcaagagcaaCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCAAGCG---------GGGG- -5'
6352 5' -56 NC_001847.1 + 62579 0.68 0.775708
Target:  5'- uUGCUCggCUUUGCguuugcccCGCGgcgaUCGCCCCg -3'
miRNA:   3'- -ACGGGaaGAAACG--------GUGCa---AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 105565 0.68 0.766236
Target:  5'- gGCCCggCgcgGCgGCGccggcgccggCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36285 0.7 0.711215
Target:  5'- cGCCCUUCcgggaucugcuggUGCUGCGgaugCGCCUCUa -3'
miRNA:   3'- aCGGGAAGaa-----------ACGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107166 0.71 0.604527
Target:  5'- cGCCCcg----GCCGCGgcCGCCUCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101571 0.71 0.594243
Target:  5'- aGCCCgg----GCCGCGccagaCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36902 0.74 0.437695
Target:  5'- cUGCCCcgCc--GCCACGgcgUCGCCUCCu -3'
miRNA:   3'- -ACGGGaaGaaaCGGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131783 0.71 0.635473
Target:  5'- aGCCUgcg---GCgCGCGUaCGCCCCCa -3'
miRNA:   3'- aCGGGaagaaaCG-GUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 64065 0.7 0.676656
Target:  5'- cGCCCUggccgGCCGCc-UCGCCgCCCu -3'
miRNA:   3'- aCGGGAagaaaCGGUGcaAGCGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.