miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 27095 0.72 0.563589
Target:  5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3'
miRNA:   3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 129908 0.72 0.563589
Target:  5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3'
miRNA:   3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 1141 0.72 0.573768
Target:  5'- cGCCCgugaCUguacugccgaUGCCGCGcgCGCUCCCa -3'
miRNA:   3'- aCGGGaa--GAa---------ACGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131153 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 28340 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 115946 0.71 0.594243
Target:  5'- cGCCg-UCUggGCCACagacccCGCCCCCg -3'
miRNA:   3'- aCGGgaAGAaaCGGUGcaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 101571 0.71 0.594243
Target:  5'- aGCCCgg----GCCGCGccagaCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 103520 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 707 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 99961 0.71 0.594243
Target:  5'- cGCuCCUccUCgaagGCCGCGU--GCCCCCg -3'
miRNA:   3'- aCG-GGA--AGaaa-CGGUGCAagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107166 0.71 0.604527
Target:  5'- cGCCCcg----GCCGCGgcCGCCUCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 4353 0.71 0.604527
Target:  5'- cGCCCcg----GCCGCGgcCGCCUCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 15585 0.71 0.614832
Target:  5'- cUGCCCgcagagUCUg-GCCGCG--CGCCCCUu -3'
miRNA:   3'- -ACGGGa-----AGAaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 15613 0.71 0.614832
Target:  5'- uUGCCCagcCUgccgGCCGCGgccgcCGCCCCUc -3'
miRNA:   3'- -ACGGGaa-GAaa--CGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 27338 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 31373 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 54090 0.71 0.614832
Target:  5'- gGCCCcgCccacGcCCACG-UCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaa-C-GGUGCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134186 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 130151 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 1349 0.71 0.62515
Target:  5'- cGCCCUgcgCg--GCCAUGUccUUGCgCCCg -3'
miRNA:   3'- aCGGGAa--GaaaCGGUGCA--AGCGgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.