miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 126643 1.13 0.001418
Target:  5'- gUGCCCUUCUUUGCCACGUUCGCCCCCa -3'
miRNA:   3'- -ACGGGAAGAAACGGUGCAAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 64428 0.78 0.266927
Target:  5'- cUGUCCUcgCgcucGCCGCGggCGCCCCCg -3'
miRNA:   3'- -ACGGGAa-Gaaa-CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107142 0.78 0.28665
Target:  5'- gGCCgCUUCg--GCCGCGgcCGCCUCCg -3'
miRNA:   3'- aCGG-GAAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 4329 0.78 0.28665
Target:  5'- gGCCgCUUCg--GCCGCGgcCGCCUCCg -3'
miRNA:   3'- aCGG-GAAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 99859 0.76 0.36868
Target:  5'- cGCCCacgcaccgUUCUUaUGCCAgCGUUUGCaCCCCg -3'
miRNA:   3'- aCGGG--------AAGAA-ACGGU-GCAAGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 43828 0.75 0.385223
Target:  5'- gGCCgCUUCUUUGCCGCGcuggCGCUgCUg -3'
miRNA:   3'- aCGG-GAAGAAACGGUGCaa--GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 74299 0.75 0.41094
Target:  5'- cGCCCUggcgccgCgcagcGCCGCGggCGCCCCUc -3'
miRNA:   3'- aCGGGAa------Gaaa--CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 71724 0.75 0.428665
Target:  5'- gGCCCgcCggcGCCGCGUgCGCUCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36902 0.74 0.437695
Target:  5'- cUGCCCcgCc--GCCACGgcgUCGCCUCCu -3'
miRNA:   3'- -ACGGGaaGaaaCGGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 118493 0.74 0.456077
Target:  5'- cGCCCgcgcc-GCCACGUUCGCcaagagcaaCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCAAGCG---------GGGG- -5'
6352 5' -56 NC_001847.1 + 55568 0.74 0.474867
Target:  5'- cGCCCgaagagGCCGCGagcccggCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa-----GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 33682 0.73 0.491137
Target:  5'- cGCCCUUgCg--GCCGCGcggcggcaguuuccgCGCCCCCc -3'
miRNA:   3'- aCGGGAA-GaaaCGGUGCaa-------------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 39309 0.73 0.513549
Target:  5'- aGCCCg----UGCCugGcUUGCCCCUg -3'
miRNA:   3'- aCGGGaagaaACGGugCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 94965 0.73 0.523424
Target:  5'- gGCCgUUCc--GCCGCGcgCaGCCCCCg -3'
miRNA:   3'- aCGGgAAGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 38324 0.73 0.523424
Target:  5'- cGCCCgcgcggUCgccGCCGCuGcgCGCCCCCc -3'
miRNA:   3'- aCGGGa-----AGaaaCGGUG-CaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 50450 0.73 0.533371
Target:  5'- aGCgCCUUCUacgGCCACGUgagCGCCgCg -3'
miRNA:   3'- aCG-GGAAGAaa-CGGUGCAa--GCGGgGg -5'
6352 5' -56 NC_001847.1 + 66324 0.72 0.543385
Target:  5'- gGCCCUUUUgcGUCAuUGUUC-CCCCCg -3'
miRNA:   3'- aCGGGAAGAaaCGGU-GCAAGcGGGGG- -5'
6352 5' -56 NC_001847.1 + 127061 0.72 0.543385
Target:  5'- cGCCgaUCUc-GCCGCGgcggUGCCCCCc -3'
miRNA:   3'- aCGGgaAGAaaCGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 5988 0.72 0.562574
Target:  5'- -cCCCUUCUucccugcUUGCuCACGgcCGCCCCUc -3'
miRNA:   3'- acGGGAAGA-------AACG-GUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 108801 0.72 0.562574
Target:  5'- -cCCCUUCUucccugcUUGCuCACGgcCGCCCCUc -3'
miRNA:   3'- acGGGAAGA-------AACG-GUGCaaGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.