Results 1 - 20 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 84475 | 0.66 | 0.890757 |
Target: 5'- aGCCCgcag--GgCACG-UCGCCCuCCa -3' miRNA: 3'- aCGGGaagaaaCgGUGCaAGCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 107214 | 0.66 | 0.897429 |
Target: 5'- gGCCCaggCgcUGuCCGCGUccuccgcgcccUcCGCCCCCu -3' miRNA: 3'- aCGGGaa-GaaAC-GGUGCA-----------A-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 16380 | 0.66 | 0.876724 |
Target: 5'- gGCCCU----UG-CAUGUUCGCCCgCu -3' miRNA: 3'- aCGGGAagaaACgGUGCAAGCGGGgG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 100471 | 0.66 | 0.876724 |
Target: 5'- cGCuCCUcCUgccGCUgcGCGgcCGCCCCCu -3' miRNA: 3'- aCG-GGAaGAaa-CGG--UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 36422 | 0.66 | 0.883854 |
Target: 5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3' miRNA: 3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 36458 | 0.66 | 0.883854 |
Target: 5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3' miRNA: 3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 84898 | 0.66 | 0.883854 |
Target: 5'- cGUCCagCUUcGCCGCGUcgucugccgCGCCCUg -3' miRNA: 3'- aCGGGaaGAAaCGGUGCAa--------GCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 6878 | 0.66 | 0.883854 |
Target: 5'- cGCCUUgcgcUUUUGCauUugGcUCGCCCCUg -3' miRNA: 3'- aCGGGAa---GAAACG--GugCaAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 80685 | 0.66 | 0.883854 |
Target: 5'- cGCCCUccuccUCgg-GCU-CGUcccCGCCCCCc -3' miRNA: 3'- aCGGGA-----AGaaaCGGuGCAa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 131192 | 0.66 | 0.883854 |
Target: 5'- cGCgCUggcgCUguggGUCGCGcUCGCCgCCCg -3' miRNA: 3'- aCGgGAa---GAaa--CGGUGCaAGCGG-GGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 83305 | 0.66 | 0.890757 |
Target: 5'- cGCCag-CUcgGCCACGUU-GCCCg- -3' miRNA: 3'- aCGGgaaGAaaCGGUGCAAgCGGGgg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 75787 | 0.66 | 0.897429 |
Target: 5'- cGCCgCUgccgccGCCGCuc-CGCCCCCg -3' miRNA: 3'- aCGG-GAagaaa-CGGUGcaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 124291 | 0.66 | 0.890757 |
Target: 5'- cGCCCgccgcgcCUcgGCCACG--CGCCgCCg -3' miRNA: 3'- aCGGGaa-----GAaaCGGUGCaaGCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 120565 | 0.66 | 0.890757 |
Target: 5'- cGUCCUUagagaGCCGCG--CGCCCgCCa -3' miRNA: 3'- aCGGGAAgaaa-CGGUGCaaGCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 60655 | 0.66 | 0.897429 |
Target: 5'- gUGCgCgcg---GCCGCGUccgCGCCCUCg -3' miRNA: 3'- -ACGgGaagaaaCGGUGCAa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 13113 | 0.66 | 0.897429 |
Target: 5'- cGUCCUccucggCUgcgGCCGCGaUCaGCaCCCCg -3' miRNA: 3'- aCGGGAa-----GAaa-CGGUGCaAG-CG-GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 23854 | 0.66 | 0.897429 |
Target: 5'- cGCCCccg---GCCgaGCGc-CGCCCCCg -3' miRNA: 3'- aCGGGaagaaaCGG--UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 71284 | 0.66 | 0.897429 |
Target: 5'- aGCCg-UCgc-GCCAUG--CGCCCCCc -3' miRNA: 3'- aCGGgaAGaaaCGGUGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 104656 | 0.66 | 0.897429 |
Target: 5'- cGCCCgagg--GCCGCGccgaUCGCgUCCCa -3' miRNA: 3'- aCGGGaagaaaCGGUGCa---AGCG-GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 4401 | 0.66 | 0.897429 |
Target: 5'- gGCCCaggCgcUGuCCGCGUccuccgcgcccUcCGCCCCCu -3' miRNA: 3'- aCGGGaa-GaaAC-GGUGCA-----------A-GCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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