miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 107166 0.71 0.604527
Target:  5'- cGCCCcg----GCCGCGgcCGCCUCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 64428 0.78 0.266927
Target:  5'- cUGUCCUcgCgcucGCCGCGggCGCCCCCg -3'
miRNA:   3'- -ACGGGAa-Gaaa-CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107142 0.78 0.28665
Target:  5'- gGCCgCUUCg--GCCGCGgcCGCCUCCg -3'
miRNA:   3'- aCGG-GAAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 108801 0.72 0.562574
Target:  5'- -cCCCUUCUucccugcUUGCuCACGgcCGCCCCUc -3'
miRNA:   3'- acGGGAAGA-------AACG-GUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 129908 0.72 0.563589
Target:  5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3'
miRNA:   3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 99859 0.76 0.36868
Target:  5'- cGCCCacgcaccgUUCUUaUGCCAgCGUUUGCaCCCCg -3'
miRNA:   3'- aCGGG--------AAGAA-ACGGU-GCAAGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 55568 0.74 0.474867
Target:  5'- cGCCCgaagagGCCGCGagcccggCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa-----GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 38324 0.73 0.523424
Target:  5'- cGCCCgcgcggUCgccGCCGCuGcgCGCCCCCc -3'
miRNA:   3'- aCGGGa-----AGaaaCGGUG-CaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 103520 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 130151 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 107214 0.66 0.897429
Target:  5'- gGCCCaggCgcUGuCCGCGUccuccgcgcccUcCGCCCCCu -3'
miRNA:   3'- aCGGGaa-GaaAC-GGUGCA-----------A-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 36902 0.74 0.437695
Target:  5'- cUGCCCcgCc--GCCACGgcgUCGCCUCCu -3'
miRNA:   3'- -ACGGGaaGaaaCGGUGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 43828 0.75 0.385223
Target:  5'- gGCCgCUUCUUUGCCGCGcuggCGCUgCUg -3'
miRNA:   3'- aCGG-GAAGAAACGGUGCaa--GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 131153 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 101571 0.71 0.594243
Target:  5'- aGCCCgg----GCCGCGccagaCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 118493 0.74 0.456077
Target:  5'- cGCCCgcgcc-GCCACGUUCGCcaagagcaaCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCAAGCG---------GGGG- -5'
6352 5' -56 NC_001847.1 + 15613 0.71 0.614832
Target:  5'- uUGCCCagcCUgccgGCCGCGgccgcCGCCCCUc -3'
miRNA:   3'- -ACGGGaa-GAaa--CGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134186 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 39309 0.73 0.513549
Target:  5'- aGCCCg----UGCCugGcUUGCCCCUg -3'
miRNA:   3'- aCGGGaagaaACGGugCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 1141 0.72 0.573768
Target:  5'- cGCCCgugaCUguacugccgaUGCCGCGcgCGCUCCCa -3'
miRNA:   3'- aCGGGaa--GAa---------ACGGUGCaaGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.