miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 707 0.71 0.594243
Target:  5'- cGUCUUUa-UUGCCGcCGUcgCGCCCCCu -3'
miRNA:   3'- aCGGGAAgaAACGGU-GCAa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 1093 0.66 0.883854
Target:  5'- cGCCUgugacUCUggagacGCCGCGU--GCCCCUg -3'
miRNA:   3'- aCGGGa----AGAaa----CGGUGCAagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 1141 0.72 0.573768
Target:  5'- cGCCCgugaCUguacugccgaUGCCGCGcgCGCUCCCa -3'
miRNA:   3'- aCGGGaa--GAa---------ACGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 1349 0.71 0.62515
Target:  5'- cGCCCUgcgCg--GCCAUGUccUUGCgCCCg -3'
miRNA:   3'- aCGGGAa--GaaaCGGUGCA--AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 2516 0.66 0.876724
Target:  5'- gGCCCUUCUUccuucccucgGaCC-CGgcggCGCUCCCg -3'
miRNA:   3'- aCGGGAAGAAa---------C-GGuGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 2752 0.68 0.766236
Target:  5'- gGCCCggCgcgGCgGCGccggcgccggCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGgUGCaa--------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 3457 0.69 0.727226
Target:  5'- cGCCCacagcgcgUUCUgcgcgGCCAUGg-CGUCCCCg -3'
miRNA:   3'- aCGGG--------AAGAaa---CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 4329 0.78 0.28665
Target:  5'- gGCCgCUUCg--GCCGCGgcCGCCUCCg -3'
miRNA:   3'- aCGG-GAAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 4353 0.71 0.604527
Target:  5'- cGCCCcg----GCCGCGgcCGCCUCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 4383 0.67 0.829485
Target:  5'- -aCUCUUCgacggcGCCACGgUCGCCgCCg -3'
miRNA:   3'- acGGGAAGaaa---CGGUGCaAGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 4401 0.66 0.897429
Target:  5'- gGCCCaggCgcUGuCCGCGUccuccgcgcccUcCGCCCCCu -3'
miRNA:   3'- aCGGGaa-GaaAC-GGUGCA-----------A-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 5988 0.72 0.562574
Target:  5'- -cCCCUUCUucccugcUUGCuCACGgcCGCCCCUc -3'
miRNA:   3'- acGGGAAGA-------AACG-GUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6324 0.68 0.812201
Target:  5'- gGCCCUUUUUgUGCgCGCcugCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAA-ACG-GUGcaaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 6359 0.67 0.829485
Target:  5'- cGCCCUggUCUgaccGCC-CGcg-GCCCCCu -3'
miRNA:   3'- aCGGGA--AGAaa--CGGuGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6878 0.66 0.883854
Target:  5'- cGCCUUgcgcUUUUGCauUugGcUCGCCCCUg -3'
miRNA:   3'- aCGGGAa---GAAACG--GugCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6963 0.67 0.846039
Target:  5'- cGCCC-----UGCCGC---CGCCCCCu -3'
miRNA:   3'- aCGGGaagaaACGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 7123 0.67 0.829485
Target:  5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3'
miRNA:   3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 7149 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5'
6352 5' -56 NC_001847.1 + 10215 0.69 0.727226
Target:  5'- gGCCCagggCgc-GCC-CGcugUCGCCCCCg -3'
miRNA:   3'- aCGGGaa--GaaaCGGuGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 11938 0.68 0.794252
Target:  5'- cGCCCUUagacGCCAUGgaCGCCgCUa -3'
miRNA:   3'- aCGGGAAgaaaCGGUGCaaGCGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.