miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 135078 0.67 0.837028
Target:  5'- gGCCCgggcccGCCGCGccgaaauUUcCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGC-------AA-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134706 0.69 0.737128
Target:  5'- cGCCgCUgCUgccGCCGCcgcCGCCCCCg -3'
miRNA:   3'- aCGG-GAaGAaa-CGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134186 0.71 0.614832
Target:  5'- gGCCCggg--UGCCgGCGcagUCGUCCCCg -3'
miRNA:   3'- aCGGGaagaaACGG-UGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 134023 0.7 0.666394
Target:  5'- cGCCgCUggugCUggagGCCGCGgcggCGCCgCCCg -3'
miRNA:   3'- aCGG-GAa---GAaa--CGGUGCaa--GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 132715 0.68 0.775708
Target:  5'- gGCCCUgccggccGCCGCGgggGCCCCUc -3'
miRNA:   3'- aCGGGAagaaa--CGGUGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131783 0.71 0.635473
Target:  5'- aGCCUgcg---GCgCGCGUaCGCCCCCa -3'
miRNA:   3'- aCGGGaagaaaCG-GUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131192 0.66 0.883854
Target:  5'- cGCgCUggcgCUguggGUCGCGcUCGCCgCCCg -3'
miRNA:   3'- aCGgGAa---GAaa--CGGUGCaAGCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 131185 0.67 0.854023
Target:  5'- cGCCC-UCgccGCCggagACGg-CGCCCCCc -3'
miRNA:   3'- aCGGGaAGaaaCGG----UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131153 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 130271 0.69 0.727226
Target:  5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3'
miRNA:   3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 130151 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 129908 0.72 0.563589
Target:  5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3'
miRNA:   3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 127402 0.67 0.837857
Target:  5'- uUGCCCUg----GCCGC---CGCCUCCg -3'
miRNA:   3'- -ACGGGAagaaaCGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 127061 0.72 0.543385
Target:  5'- cGCCgaUCUc-GCCGCGgcggUGCCCCCc -3'
miRNA:   3'- aCGGgaAGAaaCGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 126667 0.66 0.897429
Target:  5'- cGCCCccg---GCCgaGCGc-CGCCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGG--UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 126643 1.13 0.001418
Target:  5'- gUGCCCUUCUUUGCCACGUUCGCCCCCa -3'
miRNA:   3'- -ACGGGAAGAAACGGUGCAAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 124291 0.66 0.890757
Target:  5'- cGCCCgccgcgcCUcgGCCACG--CGCCgCCg -3'
miRNA:   3'- aCGGGaa-----GAaaCGGUGCaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 122649 0.67 0.837857
Target:  5'- gGCCCggguUCUUgGCCGCcccCGCCgCCa -3'
miRNA:   3'- aCGGGa---AGAAaCGGUGcaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 122550 0.66 0.861803
Target:  5'- gGCCCUUCcgacaGCCGCucgUCGCgCUCu -3'
miRNA:   3'- aCGGGAAGaaa--CGGUGca-AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 120967 0.68 0.812201
Target:  5'- aGCCCcUCccgUGCCuuuagcGCGgcCGCCCCg -3'
miRNA:   3'- aCGGGaAGaa-ACGG------UGCaaGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.