miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 120681 0.69 0.759532
Target:  5'- aGCCCggagacccagagGCCGCGgccgCGCaCCCCg -3'
miRNA:   3'- aCGGGaagaaa------CGGUGCaa--GCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 120565 0.66 0.890757
Target:  5'- cGUCCUUagagaGCCGCG--CGCCCgCCa -3'
miRNA:   3'- aCGGGAAgaaa-CGGUGCaaGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 120394 0.66 0.883854
Target:  5'- cGCCgcgggcgacugCUUCguuaUGCUgcagacgaccGCGUUCGCCUCCu -3'
miRNA:   3'- aCGG-----------GAAGaa--ACGG----------UGCAAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 120118 0.7 0.666394
Target:  5'- cGCCCggCg--GCCGCGgcucgcgCGgCCCCa -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaa-----GCgGGGG- -5'
6352 5' -56 NC_001847.1 + 118937 0.7 0.707183
Target:  5'- cGCCCUUCgcagacgGCCGCGagcaGCCCg- -3'
miRNA:   3'- aCGGGAAGaaa----CGGUGCaag-CGGGgg -5'
6352 5' -56 NC_001847.1 + 118493 0.74 0.456077
Target:  5'- cGCCCgcgcc-GCCACGUUCGCcaagagcaaCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCAAGCG---------GGGG- -5'
6352 5' -56 NC_001847.1 + 117255 0.67 0.854023
Target:  5'- cGCCCUaauccugcUCUgcgggGCCGcCGUUuuggggCGCCCCg -3'
miRNA:   3'- aCGGGA--------AGAaa---CGGU-GCAA------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 116152 0.68 0.803306
Target:  5'- gGCCCgaggcgCUggcgGCCGCGggCGCCgCg -3'
miRNA:   3'- aCGGGaa----GAaa--CGGUGCaaGCGGgGg -5'
6352 5' -56 NC_001847.1 + 115946 0.71 0.594243
Target:  5'- cGCCg-UCUggGCCACagacccCGCCCCCg -3'
miRNA:   3'- aCGGgaAGAaaCGGUGcaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 113028 0.69 0.727226
Target:  5'- gGCCCagggCgc-GCC-CGcugUCGCCCCCg -3'
miRNA:   3'- aCGGGaa--GaaaCGGuGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 110793 0.66 0.874542
Target:  5'- gGCCCUgcUCgg-GCCcccccuccacuuggACa-UCGCCCCCg -3'
miRNA:   3'- aCGGGA--AGaaaCGG--------------UGcaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 110375 0.67 0.854023
Target:  5'- cGCUCUUCgacGaCCGCGcgUCGCaCCUCa -3'
miRNA:   3'- aCGGGAAGaaaC-GGUGCa-AGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 109962 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5'
6352 5' -56 NC_001847.1 + 109936 0.67 0.829485
Target:  5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3'
miRNA:   3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109691 0.66 0.883854
Target:  5'- cGCCUUgcgcUUUUGCauUugGcUCGCCCCUg -3'
miRNA:   3'- aCGGGAa---GAAACG--GugCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109172 0.67 0.829485
Target:  5'- cGCCCUggUCUgaccGCC-CGcg-GCCCCCu -3'
miRNA:   3'- aCGGGA--AGAaa--CGGuGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109137 0.68 0.812201
Target:  5'- gGCCCUUUUUgUGCgCGCcugCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAA-ACG-GUGcaaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 108801 0.72 0.562574
Target:  5'- -cCCCUUCUucccugcUUGCuCACGgcCGCCCCUc -3'
miRNA:   3'- acGGGAAGA-------AACG-GUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107214 0.66 0.897429
Target:  5'- gGCCCaggCgcUGuCCGCGUccuccgcgcccUcCGCCCCCu -3'
miRNA:   3'- aCGGGaa-GaaAC-GGUGCA-----------A-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107166 0.71 0.604527
Target:  5'- cGCCCcg----GCCGCGgcCGCCUCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.