Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 13113 | 0.66 | 0.897429 |
Target: 5'- cGUCCUccucggCUgcgGCCGCGaUCaGCaCCCCg -3' miRNA: 3'- aCGGGAa-----GAaa-CGGUGCaAG-CG-GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 15585 | 0.71 | 0.614832 |
Target: 5'- cUGCCCgcagagUCUg-GCCGCG--CGCCCCUu -3' miRNA: 3'- -ACGGGa-----AGAaaCGGUGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 15602 | 0.67 | 0.846039 |
Target: 5'- aGCCCUUCgacuCCucaaaauacgGCGgaacgaCGCCCCCg -3' miRNA: 3'- aCGGGAAGaaacGG----------UGCaa----GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 15613 | 0.71 | 0.614832 |
Target: 5'- uUGCCCagcCUgccgGCCGCGgccgcCGCCCCUc -3' miRNA: 3'- -ACGGGaa-GAaa--CGGUGCaa---GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 15878 | 0.67 | 0.854023 |
Target: 5'- gGCCC-UCgacgaGCCGCGcgggCGCCgCCa -3' miRNA: 3'- aCGGGaAGaaa--CGGUGCaa--GCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 16051 | 0.68 | 0.785977 |
Target: 5'- cGCCCcgCggcgGCCGCGgcgccucugcugggCGCCUCCa -3' miRNA: 3'- aCGGGaaGaaa-CGGUGCaa------------GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 16205 | 0.67 | 0.837857 |
Target: 5'- gGCCCgcgCcaUGCgGCGUUgcaGCCUCCg -3' miRNA: 3'- aCGGGaa-GaaACGgUGCAAg--CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 16380 | 0.66 | 0.876724 |
Target: 5'- gGCCCU----UG-CAUGUUCGCCCgCu -3' miRNA: 3'- aCGGGAagaaACgGUGCAAGCGGGgG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 17207 | 0.67 | 0.854023 |
Target: 5'- gGCCCagCUcUGCgGCGcuuacgUUGCCCCa -3' miRNA: 3'- aCGGGaaGAaACGgUGCa-----AGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 17797 | 0.66 | 0.867875 |
Target: 5'- gGCUUUgCUcgGCCGCGgggggcgaggcCGCCCCCc -3' miRNA: 3'- aCGGGAaGAaaCGGUGCaa---------GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 17843 | 0.66 | 0.876724 |
Target: 5'- cGCCCaUCgcgGCuCGCGUUgccagCGCCgCCg -3' miRNA: 3'- aCGGGaAGaaaCG-GUGCAA-----GCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 18141 | 0.67 | 0.826085 |
Target: 5'- cGCCCaggcgaaaauagCUgcgaucaGCCACGcUCGCCCCa -3' miRNA: 3'- aCGGGaa----------GAaa-----CGGUGCaAGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 18575 | 0.68 | 0.766236 |
Target: 5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3' miRNA: 3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 20229 | 0.67 | 0.82093 |
Target: 5'- aGCCCccg--UGCCccaGgggcUCGCCCCCg -3' miRNA: 3'- aCGGGaagaaACGGug-Ca---AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 21958 | 0.68 | 0.78505 |
Target: 5'- cGUCCgggcgCUggGCCGCGgcgccggUUGCCgCCCg -3' miRNA: 3'- aCGGGaa---GAaaCGGUGCa------AGCGG-GGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 23854 | 0.66 | 0.897429 |
Target: 5'- cGCCCccg---GCCgaGCGc-CGCCCCCg -3' miRNA: 3'- aCGGGaagaaaCGG--UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 26508 | 0.66 | 0.861803 |
Target: 5'- gGCCaCUUC--UGCaGCG-UCGCCCgCCg -3' miRNA: 3'- aCGG-GAAGaaACGgUGCaAGCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 27095 | 0.72 | 0.563589 |
Target: 5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3' miRNA: 3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 27338 | 0.71 | 0.614832 |
Target: 5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3' miRNA: 3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 27458 | 0.69 | 0.727226 |
Target: 5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3' miRNA: 3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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