miRNA display CGI


Results 21 - 40 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 13113 0.66 0.897429
Target:  5'- cGUCCUccucggCUgcgGCCGCGaUCaGCaCCCCg -3'
miRNA:   3'- aCGGGAa-----GAaa-CGGUGCaAG-CG-GGGG- -5'
6352 5' -56 NC_001847.1 + 15585 0.71 0.614832
Target:  5'- cUGCCCgcagagUCUg-GCCGCG--CGCCCCUu -3'
miRNA:   3'- -ACGGGa-----AGAaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 15602 0.67 0.846039
Target:  5'- aGCCCUUCgacuCCucaaaauacgGCGgaacgaCGCCCCCg -3'
miRNA:   3'- aCGGGAAGaaacGG----------UGCaa----GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 15613 0.71 0.614832
Target:  5'- uUGCCCagcCUgccgGCCGCGgccgcCGCCCCUc -3'
miRNA:   3'- -ACGGGaa-GAaa--CGGUGCaa---GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 15878 0.67 0.854023
Target:  5'- gGCCC-UCgacgaGCCGCGcgggCGCCgCCa -3'
miRNA:   3'- aCGGGaAGaaa--CGGUGCaa--GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 16051 0.68 0.785977
Target:  5'- cGCCCcgCggcgGCCGCGgcgccucugcugggCGCCUCCa -3'
miRNA:   3'- aCGGGaaGaaa-CGGUGCaa------------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 16205 0.67 0.837857
Target:  5'- gGCCCgcgCcaUGCgGCGUUgcaGCCUCCg -3'
miRNA:   3'- aCGGGaa-GaaACGgUGCAAg--CGGGGG- -5'
6352 5' -56 NC_001847.1 + 16380 0.66 0.876724
Target:  5'- gGCCCU----UG-CAUGUUCGCCCgCu -3'
miRNA:   3'- aCGGGAagaaACgGUGCAAGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 17207 0.67 0.854023
Target:  5'- gGCCCagCUcUGCgGCGcuuacgUUGCCCCa -3'
miRNA:   3'- aCGGGaaGAaACGgUGCa-----AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 17797 0.66 0.867875
Target:  5'- gGCUUUgCUcgGCCGCGgggggcgaggcCGCCCCCc -3'
miRNA:   3'- aCGGGAaGAaaCGGUGCaa---------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 17843 0.66 0.876724
Target:  5'- cGCCCaUCgcgGCuCGCGUUgccagCGCCgCCg -3'
miRNA:   3'- aCGGGaAGaaaCG-GUGCAA-----GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 18141 0.67 0.826085
Target:  5'- cGCCCaggcgaaaauagCUgcgaucaGCCACGcUCGCCCCa -3'
miRNA:   3'- aCGGGaa----------GAaa-----CGGUGCaAGCGGGGg -5'
6352 5' -56 NC_001847.1 + 18575 0.68 0.766236
Target:  5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3'
miRNA:   3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5'
6352 5' -56 NC_001847.1 + 20229 0.67 0.82093
Target:  5'- aGCCCccg--UGCCccaGgggcUCGCCCCCg -3'
miRNA:   3'- aCGGGaagaaACGGug-Ca---AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 21958 0.68 0.78505
Target:  5'- cGUCCgggcgCUggGCCGCGgcgccggUUGCCgCCCg -3'
miRNA:   3'- aCGGGaa---GAaaCGGUGCa------AGCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 23854 0.66 0.897429
Target:  5'- cGCCCccg---GCCgaGCGc-CGCCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGG--UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 26508 0.66 0.861803
Target:  5'- gGCCaCUUC--UGCaGCG-UCGCCCgCCg -3'
miRNA:   3'- aCGG-GAAGaaACGgUGCaAGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 27095 0.72 0.563589
Target:  5'- gGCaaaccCUUUGCCGCGcgCGCCCCg -3'
miRNA:   3'- aCGggaa-GAAACGGUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 27338 0.71 0.614832
Target:  5'- cGCCgcgCUUUGCCGCGgcCGCcgcagCCCCa -3'
miRNA:   3'- aCGGgaaGAAACGGUGCaaGCG-----GGGG- -5'
6352 5' -56 NC_001847.1 + 27458 0.69 0.727226
Target:  5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3'
miRNA:   3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.