Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 80685 | 0.66 | 0.883854 |
Target: 5'- cGCCCUccuccUCgg-GCU-CGUcccCGCCCCCc -3' miRNA: 3'- aCGGGA-----AGaaaCGGuGCAa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 6878 | 0.66 | 0.883854 |
Target: 5'- cGCCUUgcgcUUUUGCauUugGcUCGCCCCUg -3' miRNA: 3'- aCGGGAa---GAAACG--GugCaAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 84898 | 0.66 | 0.883854 |
Target: 5'- cGUCCagCUUcGCCGCGUcgucugccgCGCCCUg -3' miRNA: 3'- aCGGGaaGAAaCGGUGCAa--------GCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 36458 | 0.66 | 0.883854 |
Target: 5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3' miRNA: 3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 36422 | 0.66 | 0.883854 |
Target: 5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3' miRNA: 3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 2516 | 0.66 | 0.876724 |
Target: 5'- gGCCCUUCUUccuucccucgGaCC-CGgcggCGCUCCCg -3' miRNA: 3'- aCGGGAAGAAa---------C-GGuGCaa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 17843 | 0.66 | 0.876724 |
Target: 5'- cGCCCaUCgcgGCuCGCGUUgccagCGCCgCCg -3' miRNA: 3'- aCGGGaAGaaaCG-GUGCAA-----GCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 105329 | 0.66 | 0.876724 |
Target: 5'- gGCCCUUCUUccuucccucgGaCC-CGgcggCGCUCCCg -3' miRNA: 3'- aCGGGAAGAAa---------C-GGuGCaa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 68147 | 0.66 | 0.876724 |
Target: 5'- cUGcCCCUUCUccggcGCCGCGccgcaGCCCgCCu -3' miRNA: 3'- -AC-GGGAAGAaa---CGGUGCaag--CGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 100471 | 0.66 | 0.876724 |
Target: 5'- cGCuCCUcCUgccGCUgcGCGgcCGCCCCCu -3' miRNA: 3'- aCG-GGAaGAaa-CGG--UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 48712 | 0.66 | 0.876724 |
Target: 5'- cUGCCCgc----GCCGCGcagCGCCgCCa -3' miRNA: 3'- -ACGGGaagaaaCGGUGCaa-GCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 75077 | 0.66 | 0.876724 |
Target: 5'- uUGCCCUccgugucgcucUCUUcgcGCCGCc-UCGCgCCCg -3' miRNA: 3'- -ACGGGA-----------AGAAa--CGGUGcaAGCGgGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 106074 | 0.66 | 0.876724 |
Target: 5'- cGCCCgccaccGCCACGca-GCCCaCCg -3' miRNA: 3'- aCGGGaagaaaCGGUGCaagCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 16380 | 0.66 | 0.876724 |
Target: 5'- gGCCCU----UG-CAUGUUCGCCCgCu -3' miRNA: 3'- aCGGGAagaaACgGUGCAAGCGGGgG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 110793 | 0.66 | 0.874542 |
Target: 5'- gGCCCUgcUCgg-GCCcccccuccacuuggACa-UCGCCCCCg -3' miRNA: 3'- aCGGGA--AGaaaCGG--------------UGcaAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 46790 | 0.66 | 0.869372 |
Target: 5'- cGCCCgcgc--GCCccuCGUUC-CCCCCg -3' miRNA: 3'- aCGGGaagaaaCGGu--GCAAGcGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 55487 | 0.66 | 0.869372 |
Target: 5'- cUGCCCUgCUauggGCgACGUggGCCCUg -3' miRNA: 3'- -ACGGGAaGAaa--CGgUGCAagCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 54939 | 0.66 | 0.869372 |
Target: 5'- cGCCCUgcgCUUcGCgGCGcaccCGCCCgCa -3' miRNA: 3'- aCGGGAa--GAAaCGgUGCaa--GCGGGgG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 85432 | 0.66 | 0.869372 |
Target: 5'- cGCCCac--UUGCacggGCGccgCGCCCCCg -3' miRNA: 3'- aCGGGaagaAACGg---UGCaa-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 80754 | 0.66 | 0.869372 |
Target: 5'- cGCCCgccUCgc--CCGCGgcCGCCCgCCg -3' miRNA: 3'- aCGGGa--AGaaacGGUGCaaGCGGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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