miRNA display CGI


Results 21 - 40 of 192 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 36422 0.66 0.883854
Target:  5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3'
miRNA:   3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5'
6352 5' -56 NC_001847.1 + 36458 0.66 0.883854
Target:  5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3'
miRNA:   3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5'
6352 5' -56 NC_001847.1 + 84898 0.66 0.883854
Target:  5'- cGUCCagCUUcGCCGCGUcgucugccgCGCCCUg -3'
miRNA:   3'- aCGGGaaGAAaCGGUGCAa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 80685 0.66 0.883854
Target:  5'- cGCCCUccuccUCgg-GCU-CGUcccCGCCCCCc -3'
miRNA:   3'- aCGGGA-----AGaaaCGGuGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6878 0.66 0.883854
Target:  5'- cGCCUUgcgcUUUUGCauUugGcUCGCCCCUg -3'
miRNA:   3'- aCGGGAa---GAAACG--GugCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 68147 0.66 0.876724
Target:  5'- cUGcCCCUUCUccggcGCCGCGccgcaGCCCgCCu -3'
miRNA:   3'- -AC-GGGAAGAaa---CGGUGCaag--CGGG-GG- -5'
6352 5' -56 NC_001847.1 + 105329 0.66 0.876724
Target:  5'- gGCCCUUCUUccuucccucgGaCC-CGgcggCGCUCCCg -3'
miRNA:   3'- aCGGGAAGAAa---------C-GGuGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 17843 0.66 0.876724
Target:  5'- cGCCCaUCgcgGCuCGCGUUgccagCGCCgCCg -3'
miRNA:   3'- aCGGGaAGaaaCG-GUGCAA-----GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 100471 0.66 0.876724
Target:  5'- cGCuCCUcCUgccGCUgcGCGgcCGCCCCCu -3'
miRNA:   3'- aCG-GGAaGAaa-CGG--UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 16380 0.66 0.876724
Target:  5'- gGCCCU----UG-CAUGUUCGCCCgCu -3'
miRNA:   3'- aCGGGAagaaACgGUGCAAGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 48712 0.66 0.876724
Target:  5'- cUGCCCgc----GCCGCGcagCGCCgCCa -3'
miRNA:   3'- -ACGGGaagaaaCGGUGCaa-GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 2516 0.66 0.876724
Target:  5'- gGCCCUUCUUccuucccucgGaCC-CGgcggCGCUCCCg -3'
miRNA:   3'- aCGGGAAGAAa---------C-GGuGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 106074 0.66 0.876724
Target:  5'- cGCCCgccaccGCCACGca-GCCCaCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaagCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 75077 0.66 0.876724
Target:  5'- uUGCCCUccgugucgcucUCUUcgcGCCGCc-UCGCgCCCg -3'
miRNA:   3'- -ACGGGA-----------AGAAa--CGGUGcaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 110793 0.66 0.874542
Target:  5'- gGCCCUgcUCgg-GCCcccccuccacuuggACa-UCGCCCCCg -3'
miRNA:   3'- aCGGGA--AGaaaCGG--------------UGcaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 54939 0.66 0.869372
Target:  5'- cGCCCUgcgCUUcGCgGCGcaccCGCCCgCa -3'
miRNA:   3'- aCGGGAa--GAAaCGgUGCaa--GCGGGgG- -5'
6352 5' -56 NC_001847.1 + 55487 0.66 0.869372
Target:  5'- cUGCCCUgCUauggGCgACGUggGCCCUg -3'
miRNA:   3'- -ACGGGAaGAaa--CGgUGCAagCGGGGg -5'
6352 5' -56 NC_001847.1 + 80754 0.66 0.869372
Target:  5'- cGCCCgccUCgc--CCGCGgcCGCCCgCCg -3'
miRNA:   3'- aCGGGa--AGaaacGGUGCaaGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 85432 0.66 0.869372
Target:  5'- cGCCCac--UUGCacggGCGccgCGCCCCCg -3'
miRNA:   3'- aCGGGaagaAACGg---UGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 46790 0.66 0.869372
Target:  5'- cGCCCgcgc--GCCccuCGUUC-CCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGu--GCAAGcGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.