Results 41 - 60 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 17797 | 0.66 | 0.867875 |
Target: 5'- gGCUUUgCUcgGCCGCGgggggcgaggcCGCCCCCc -3' miRNA: 3'- aCGGGAaGAaaCGGUGCaa---------GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 100398 | 0.66 | 0.861803 |
Target: 5'- cGCCag-CUcgGCCGCGUcgaaggcggaguUCGCCUCg -3' miRNA: 3'- aCGGgaaGAaaCGGUGCA------------AGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 65649 | 0.66 | 0.861803 |
Target: 5'- cGCCaa-Cg--GCCGCGUgcgCGCCCgCa -3' miRNA: 3'- aCGGgaaGaaaCGGUGCAa--GCGGGgG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 26508 | 0.66 | 0.861803 |
Target: 5'- gGCCaCUUC--UGCaGCG-UCGCCCgCCg -3' miRNA: 3'- aCGG-GAAGaaACGgUGCaAGCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 51168 | 0.66 | 0.861803 |
Target: 5'- gGCgCCUUCgc-GCgguacgguaCACGUcucCGCCCCCg -3' miRNA: 3'- aCG-GGAAGaaaCG---------GUGCAa--GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 122550 | 0.66 | 0.861803 |
Target: 5'- gGCCCUUCcgacaGCCGCucgUCGCgCUCu -3' miRNA: 3'- aCGGGAAGaaa--CGGUGca-AGCGgGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 38649 | 0.67 | 0.854023 |
Target: 5'- aUGCCCgcCgcgUUGCCGUGgcgaCGCCCgCCg -3' miRNA: 3'- -ACGGGaaGa--AACGGUGCaa--GCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 28372 | 0.67 | 0.854023 |
Target: 5'- cGCCC-UCgccGCCggagACGg-CGCCCCCc -3' miRNA: 3'- aCGGGaAGaaaCGG----UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 90850 | 0.67 | 0.854023 |
Target: 5'- gGCCCgcCgc-GCCGCGccgCGCCgCCg -3' miRNA: 3'- aCGGGaaGaaaCGGUGCaa-GCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 101623 | 0.67 | 0.854023 |
Target: 5'- cGCCCggCgccuCCGCGgcggCGCCCgCCg -3' miRNA: 3'- aCGGGaaGaaacGGUGCaa--GCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 131185 | 0.67 | 0.854023 |
Target: 5'- cGCCC-UCgccGCCggagACGg-CGCCCCCc -3' miRNA: 3'- aCGGGaAGaaaCGG----UGCaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 55298 | 0.67 | 0.854023 |
Target: 5'- cGCCggaCUUCUcagacGCCGCGgUCGCCCaCUu -3' miRNA: 3'- aCGG---GAAGAaa---CGGUGCaAGCGGG-GG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 32441 | 0.67 | 0.854023 |
Target: 5'- gGCCUUUCgccGCCcgcccgGCGcccUGCCCCCg -3' miRNA: 3'- aCGGGAAGaaaCGG------UGCaa-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 17207 | 0.67 | 0.854023 |
Target: 5'- gGCCCagCUcUGCgGCGcuuacgUUGCCCCa -3' miRNA: 3'- aCGGGaaGAaACGgUGCa-----AGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 81504 | 0.67 | 0.854023 |
Target: 5'- gUGCCCggUCUUUGUCGCGgaCGCg--- -3' miRNA: 3'- -ACGGGa-AGAAACGGUGCaaGCGgggg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 117255 | 0.67 | 0.854023 |
Target: 5'- cGCCCUaauccugcUCUgcgggGCCGcCGUUuuggggCGCCCCg -3' miRNA: 3'- aCGGGA--------AGAaa---CGGU-GCAA------GCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 15878 | 0.67 | 0.854023 |
Target: 5'- gGCCC-UCgacgaGCCGCGcgggCGCCgCCa -3' miRNA: 3'- aCGGGaAGaaa--CGGUGCaa--GCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 110375 | 0.67 | 0.854023 |
Target: 5'- cGCUCUUCgacGaCCGCGcgUCGCaCCUCa -3' miRNA: 3'- aCGGGAAGaaaC-GGUGCa-AGCG-GGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 92586 | 0.67 | 0.853234 |
Target: 5'- cGCCgaggaggacgcgGCCGCGUccUCGCCCUCa -3' miRNA: 3'- aCGGgaagaaa-----CGGUGCA--AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 55727 | 0.67 | 0.846039 |
Target: 5'- cGCCC-UCgggcGCCACGgugguccggcUCGCgCCCg -3' miRNA: 3'- aCGGGaAGaaa-CGGUGCa---------AGCGgGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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