Results 61 - 80 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6352 | 5' | -56 | NC_001847.1 | + | 101678 | 0.67 | 0.846039 |
Target: 5'- cGCCUcgaagCga-GCCAUGcUCGCCUCCa -3' miRNA: 3'- aCGGGaa---GaaaCGGUGCaAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 6963 | 0.67 | 0.846039 |
Target: 5'- cGCCC-----UGCCGC---CGCCCCCu -3' miRNA: 3'- aCGGGaagaaACGGUGcaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 83218 | 0.67 | 0.846039 |
Target: 5'- cGCCCcg----GCCACGaUCGCCgugagCCCg -3' miRNA: 3'- aCGGGaagaaaCGGUGCaAGCGG-----GGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 80577 | 0.67 | 0.846039 |
Target: 5'- aGCCCgcggg-GCCGuCGUccuccgcgcCGCCCCCg -3' miRNA: 3'- aCGGGaagaaaCGGU-GCAa--------GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 15602 | 0.67 | 0.846039 |
Target: 5'- aGCCCUUCgacuCCucaaaauacgGCGgaacgaCGCCCCCg -3' miRNA: 3'- aCGGGAAGaaacGG----------UGCaa----GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 39797 | 0.67 | 0.846039 |
Target: 5'- gGCCCcgCUcc-CCugGcugCGCCCCCu -3' miRNA: 3'- aCGGGaaGAaacGGugCaa-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 55727 | 0.67 | 0.846039 |
Target: 5'- cGCCC-UCgggcGCCACGgugguccggcUCGCgCCCg -3' miRNA: 3'- aCGGGaAGaaa-CGGUGCa---------AGCGgGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 88486 | 0.67 | 0.843605 |
Target: 5'- cGCCCUaCUcUGCCgaauggacgacgGCGgcugcgacgccaagUUCGCCCUCg -3' miRNA: 3'- aCGGGAaGAaACGG------------UGC--------------AAGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 16205 | 0.67 | 0.837857 |
Target: 5'- gGCCCgcgCcaUGCgGCGUUgcaGCCUCCg -3' miRNA: 3'- aCGGGaa-GaaACGgUGCAAg--CGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 91142 | 0.67 | 0.837857 |
Target: 5'- gGCCCUcaaaacuauucUCgcugGCCACGcgCGCCUUa -3' miRNA: 3'- aCGGGA-----------AGaaa-CGGUGCaaGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 127402 | 0.67 | 0.837857 |
Target: 5'- uUGCCCUg----GCCGC---CGCCUCCg -3' miRNA: 3'- -ACGGGAagaaaCGGUGcaaGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 89638 | 0.67 | 0.837857 |
Target: 5'- cGCCCggCg--GCgGCGccCGCCCCg -3' miRNA: 3'- aCGGGaaGaaaCGgUGCaaGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 43568 | 0.67 | 0.837857 |
Target: 5'- cGCgCUUCgccgcggGCgACGcgCGCCCCa -3' miRNA: 3'- aCGgGAAGaaa----CGgUGCaaGCGGGGg -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 122649 | 0.67 | 0.837857 |
Target: 5'- gGCCCggguUCUUgGCCGCcccCGCCgCCa -3' miRNA: 3'- aCGGGa---AGAAaCGGUGcaaGCGGgGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 135078 | 0.67 | 0.837028 |
Target: 5'- gGCCCgggcccGCCGCGccgaaauUUcCGCCCCCc -3' miRNA: 3'- aCGGGaagaaaCGGUGC-------AA-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 32265 | 0.67 | 0.837028 |
Target: 5'- gGCCCgggcccGCCGCGccgaaauUUcCGCCCCCc -3' miRNA: 3'- aCGGGaagaaaCGGUGC-------AA-GCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 6359 | 0.67 | 0.829485 |
Target: 5'- cGCCCUggUCUgaccGCC-CGcg-GCCCCCu -3' miRNA: 3'- aCGGGA--AGAaa--CGGuGCaagCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 7123 | 0.67 | 0.829485 |
Target: 5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3' miRNA: 3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 109936 | 0.67 | 0.829485 |
Target: 5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3' miRNA: 3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5' |
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6352 | 5' | -56 | NC_001847.1 | + | 39906 | 0.67 | 0.829485 |
Target: 5'- cGCCCccgaUCgc-GCCcCGaucgCGCCCCCg -3' miRNA: 3'- aCGGGa---AGaaaCGGuGCaa--GCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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