miRNA display CGI


Results 61 - 80 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 36285 0.7 0.711215
Target:  5'- cGCCCUUCcgggaucugcuggUGCUGCGgaugCGCCUCUa -3'
miRNA:   3'- aCGGGAAGaa-----------ACGGUGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 75222 0.69 0.713227
Target:  5'- cGCCCUUCcgccggcucucGCCGCGcgcgcgCGCCgCCCu -3'
miRNA:   3'- aCGGGAAGaaa--------CGGUGCaa----GCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 3457 0.69 0.727226
Target:  5'- cGCCCacagcgcgUUCUgcgcgGCCAUGg-CGUCCCCg -3'
miRNA:   3'- aCGGG--------AAGAaa---CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 98186 0.69 0.727226
Target:  5'- cGCCCgcgCUg-GCCGCa---GCCCCCg -3'
miRNA:   3'- aCGGGaa-GAaaCGGUGcaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 10215 0.69 0.727226
Target:  5'- gGCCCagggCgc-GCC-CGcugUCGCCCCCg -3'
miRNA:   3'- aCGGGaa--GaaaCGGuGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 27458 0.69 0.727226
Target:  5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3'
miRNA:   3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 106270 0.69 0.727226
Target:  5'- cGCCCacagcgcgUUCUgcgcgGCCAUGg-CGUCCCCg -3'
miRNA:   3'- aCGGG--------AAGAaa---CGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 130271 0.69 0.727226
Target:  5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3'
miRNA:   3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 113028 0.69 0.727226
Target:  5'- gGCCCagggCgc-GCC-CGcugUCGCCCCCg -3'
miRNA:   3'- aCGGGaa--GaaaCGGuGCa--AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 78336 0.69 0.735155
Target:  5'- gGCCCggCUUgggcGCCGCGgcggcgaacaGCCCCUc -3'
miRNA:   3'- aCGGGaaGAAa---CGGUGCaag-------CGGGGG- -5'
6352 5' -56 NC_001847.1 + 134706 0.69 0.737128
Target:  5'- cGCCgCUgCUgccGCCGCcgcCGCCCCCg -3'
miRNA:   3'- aCGG-GAaGAaa-CGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 92127 0.69 0.737128
Target:  5'- cGCaCCUUUUcggcgGCC-CGgcgCGCCCCCc -3'
miRNA:   3'- aCG-GGAAGAaa---CGGuGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 67313 0.69 0.737128
Target:  5'- gGCCCUUUUUggGCCGCGcggaCGCCgCg -3'
miRNA:   3'- aCGGGAAGAAa-CGGUGCaa--GCGGgGg -5'
6352 5' -56 NC_001847.1 + 62522 0.69 0.753741
Target:  5'- cGCCCUUU--UGCCcguagccaggggaaGCGgcUGCCCCUu -3'
miRNA:   3'- aCGGGAAGaaACGG--------------UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 29915 0.69 0.756642
Target:  5'- cGCCCgcCUgUGCC-CGcgCGCCCgCg -3'
miRNA:   3'- aCGGGaaGAaACGGuGCaaGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 56871 0.69 0.756642
Target:  5'- gGCCCgggCgcgGCCACGg--GCCCgCCg -3'
miRNA:   3'- aCGGGaa-GaaaCGGUGCaagCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 52086 0.69 0.756642
Target:  5'- cGCUCUUCg--GCCGCGccgCGgCCCa -3'
miRNA:   3'- aCGGGAAGaaaCGGUGCaa-GCgGGGg -5'
6352 5' -56 NC_001847.1 + 120681 0.69 0.759532
Target:  5'- aGCCCggagacccagagGCCGCGgccgCGCaCCCCg -3'
miRNA:   3'- aCGGGaagaaa------CGGUGCaa--GCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 33757 0.68 0.766236
Target:  5'- uUGCCgg-CggcGCCGCGggCaGCCCCCg -3'
miRNA:   3'- -ACGGgaaGaaaCGGUGCaaG-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 18575 0.68 0.766236
Target:  5'- gGCCCgug--UGCCGCGccaaagUCGCCCa- -3'
miRNA:   3'- aCGGGaagaaACGGUGCa-----AGCGGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.