miRNA display CGI


Results 81 - 100 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 7123 0.67 0.829485
Target:  5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3'
miRNA:   3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6359 0.67 0.829485
Target:  5'- cGCCCUggUCUgaccGCC-CGcg-GCCCCCu -3'
miRNA:   3'- aCGGGA--AGAaa--CGGuGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 78303 0.67 0.827789
Target:  5'- gUGCUCgggcggCUggGCCGCccccuccccgCGCCCCCa -3'
miRNA:   3'- -ACGGGaa----GAaaCGGUGcaa-------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 18141 0.67 0.826085
Target:  5'- cGCCCaggcgaaaauagCUgcgaucaGCCACGcUCGCCCCa -3'
miRNA:   3'- aCGGGaa----------GAaa-----CGGUGCaAGCGGGGg -5'
6352 5' -56 NC_001847.1 + 66675 0.67 0.82093
Target:  5'- aUGCCCgUCUUcaacccucGCCuccacaGCGggCGCUCCCg -3'
miRNA:   3'- -ACGGGaAGAAa-------CGG------UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 29902 0.67 0.82093
Target:  5'- gGCCCUgccggccGCCGCGggggGCCCCUc -3'
miRNA:   3'- aCGGGAagaaa--CGGUGCaag-CGGGGG- -5'
6352 5' -56 NC_001847.1 + 103919 0.67 0.82093
Target:  5'- cGCCCcgCUUUcgcgcGcCCACGccgCGCCCUCa -3'
miRNA:   3'- aCGGGaaGAAA-----C-GGUGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 88227 0.67 0.82093
Target:  5'- aGCCCgg----GCC-CGacgCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGuGCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 20229 0.67 0.82093
Target:  5'- aGCCCccg--UGCCccaGgggcUCGCCCCCg -3'
miRNA:   3'- aCGGGaagaaACGGug-Ca---AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 6324 0.68 0.812201
Target:  5'- gGCCCUUUUUgUGCgCGCcugCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAA-ACG-GUGcaaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 109137 0.68 0.812201
Target:  5'- gGCCCUUUUUgUGCgCGCcugCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAA-ACG-GUGcaaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 120967 0.68 0.812201
Target:  5'- aGCCCcUCccgUGCCuuuagcGCGgcCGCCCCg -3'
miRNA:   3'- aCGGGaAGaa-ACGG------UGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 61955 0.68 0.80955
Target:  5'- gGCCCgcgCgggccgacuccgccGCCGCGUcCGCCUCCu -3'
miRNA:   3'- aCGGGaa-Gaaa-----------CGGUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 62148 0.68 0.806883
Target:  5'- cGCCCgcgCUgcgGCCagcucccgcgcgggcGCGUccgCGUCCCCa -3'
miRNA:   3'- aCGGGaa-GAaa-CGG---------------UGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109962 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5'
6352 5' -56 NC_001847.1 + 59647 0.68 0.803306
Target:  5'- cGCUCUUUUgaGCC-CGcUCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAaaCGGuGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 116152 0.68 0.803306
Target:  5'- gGCCCgaggcgCUggcgGCCGCGggCGCCgCg -3'
miRNA:   3'- aCGGGaa----GAaa--CGGUGCaaGCGGgGg -5'
6352 5' -56 NC_001847.1 + 105693 0.68 0.803306
Target:  5'- gGCgCUUCg--GCCGCGggcggcgccaCGCCCCa -3'
miRNA:   3'- aCGgGAAGaaaCGGUGCaa--------GCGGGGg -5'
6352 5' -56 NC_001847.1 + 84864 0.68 0.803306
Target:  5'- aGCCCggCUaggcgGcCCACGUaCGCgCCCa -3'
miRNA:   3'- aCGGGaaGAaa---C-GGUGCAaGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 7149 0.68 0.803306
Target:  5'- -cCCCUUCgggcgUGUCGCGcUCGCUcgCCCg -3'
miRNA:   3'- acGGGAAGaa---ACGGUGCaAGCGG--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.