miRNA display CGI


Results 61 - 80 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 39592 0.67 0.846039
Target:  5'- gGCCCcagCgcUGCUGCGgcgCGgCCCCa -3'
miRNA:   3'- aCGGGaa-GaaACGGUGCaa-GCgGGGG- -5'
6352 5' -56 NC_001847.1 + 39797 0.67 0.846039
Target:  5'- gGCCCcgCUcc-CCugGcugCGCCCCCu -3'
miRNA:   3'- aCGGGaaGAaacGGugCaa-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 39906 0.67 0.829485
Target:  5'- cGCCCccgaUCgc-GCCcCGaucgCGCCCCCg -3'
miRNA:   3'- aCGGGa---AGaaaCGGuGCaa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 43568 0.67 0.837857
Target:  5'- cGCgCUUCgccgcggGCgACGcgCGCCCCa -3'
miRNA:   3'- aCGgGAAGaaa----CGgUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 43828 0.75 0.385223
Target:  5'- gGCCgCUUCUUUGCCGCGcuggCGCUgCUg -3'
miRNA:   3'- aCGG-GAAGAAACGGUGCaa--GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 46790 0.66 0.869372
Target:  5'- cGCCCgcgc--GCCccuCGUUC-CCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGu--GCAAGcGGGGG- -5'
6352 5' -56 NC_001847.1 + 48712 0.66 0.876724
Target:  5'- cUGCCCgc----GCCGCGcagCGCCgCCa -3'
miRNA:   3'- -ACGGGaagaaaCGGUGCaa-GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 50450 0.73 0.533371
Target:  5'- aGCgCCUUCUacgGCCACGUgagCGCCgCg -3'
miRNA:   3'- aCG-GGAAGAaa-CGGUGCAa--GCGGgGg -5'
6352 5' -56 NC_001847.1 + 51168 0.66 0.861803
Target:  5'- gGCgCCUUCgc-GCgguacgguaCACGUcucCGCCCCCg -3'
miRNA:   3'- aCG-GGAAGaaaCG---------GUGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 52086 0.69 0.756642
Target:  5'- cGCUCUUCg--GCCGCGccgCGgCCCa -3'
miRNA:   3'- aCGGGAAGaaaCGGUGCaa-GCgGGGg -5'
6352 5' -56 NC_001847.1 + 52657 0.7 0.676656
Target:  5'- cGCCCgcacg-GCCGCGggcUCGUCCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCa--AGCGGGGg -5'
6352 5' -56 NC_001847.1 + 53994 0.66 0.890757
Target:  5'- cGCCCggc---GCCGCGUUgGCUCUa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCAAgCGGGGg -5'
6352 5' -56 NC_001847.1 + 54090 0.71 0.614832
Target:  5'- gGCCCcgCccacGcCCACG-UCGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaa-C-GGUGCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 54939 0.66 0.869372
Target:  5'- cGCCCUgcgCUUcGCgGCGcaccCGCCCgCa -3'
miRNA:   3'- aCGGGAa--GAAaCGgUGCaa--GCGGGgG- -5'
6352 5' -56 NC_001847.1 + 55298 0.67 0.854023
Target:  5'- cGCCggaCUUCUcagacGCCGCGgUCGCCCaCUu -3'
miRNA:   3'- aCGG---GAAGAaa---CGGUGCaAGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 55487 0.66 0.869372
Target:  5'- cUGCCCUgCUauggGCgACGUggGCCCUg -3'
miRNA:   3'- -ACGGGAaGAaa--CGgUGCAagCGGGGg -5'
6352 5' -56 NC_001847.1 + 55568 0.74 0.474867
Target:  5'- cGCCCgaagagGCCGCGagcccggCGCCCCCc -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaa-----GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 55727 0.67 0.846039
Target:  5'- cGCCC-UCgggcGCCACGgugguccggcUCGCgCCCg -3'
miRNA:   3'- aCGGGaAGaaa-CGGUGCa---------AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 56871 0.69 0.756642
Target:  5'- gGCCCgggCgcgGCCACGg--GCCCgCCg -3'
miRNA:   3'- aCGGGaa-GaaaCGGUGCaagCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 58741 0.7 0.676656
Target:  5'- gUGCCCcc----GCCGCGgcccccggCGCCCCCc -3'
miRNA:   3'- -ACGGGaagaaaCGGUGCaa------GCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.