miRNA display CGI


Results 61 - 80 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 29915 0.69 0.756642
Target:  5'- cGCCCgcCUgUGCC-CGcgCGCCCgCg -3'
miRNA:   3'- aCGGGaaGAaACGGuGCaaGCGGGgG- -5'
6352 5' -56 NC_001847.1 + 132715 0.68 0.775708
Target:  5'- gGCCCUgccggccGCCGCGgggGCCCCUc -3'
miRNA:   3'- aCGGGAagaaa--CGGUGCaagCGGGGG- -5'
6352 5' -56 NC_001847.1 + 118493 0.74 0.456077
Target:  5'- cGCCCgcgcc-GCCACGUUCGCcaagagcaaCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGUGCAAGCG---------GGGG- -5'
6352 5' -56 NC_001847.1 + 38324 0.73 0.523424
Target:  5'- cGCCCgcgcggUCgccGCCGCuGcgCGCCCCCc -3'
miRNA:   3'- aCGGGa-----AGaaaCGGUG-CaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131153 0.72 0.583988
Target:  5'- cGCCCcgCgggGCCGCGcgCccggGCCCCCg -3'
miRNA:   3'- aCGGGaaGaaaCGGUGCaaG----CGGGGG- -5'
6352 5' -56 NC_001847.1 + 107166 0.71 0.604527
Target:  5'- cGCCCcg----GCCGCGgcCGCCUCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 104162 0.71 0.62515
Target:  5'- cGCCCUgcgCg--GCCAUGUccUUGCgCCCg -3'
miRNA:   3'- aCGGGAa--GaaaCGGUGCA--AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 66285 0.7 0.666394
Target:  5'- gGCCCggCgcacgccGCCGCGcUCGCgCCCg -3'
miRNA:   3'- aCGGGaaGaaa----CGGUGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 118937 0.7 0.707183
Target:  5'- cGCCCUUCgcagacgGCCGCGagcaGCCCg- -3'
miRNA:   3'- aCGGGAAGaaa----CGGUGCaag-CGGGgg -5'
6352 5' -56 NC_001847.1 + 130271 0.69 0.727226
Target:  5'- gGCCCUgccgcUGCC-CGc-CGCCCCCc -3'
miRNA:   3'- aCGGGAagaa-ACGGuGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 17843 0.66 0.876724
Target:  5'- cGCCCaUCgcgGCuCGCGUUgccagCGCCgCCg -3'
miRNA:   3'- aCGGGaAGaaaCG-GUGCAA-----GCGGgGG- -5'
6352 5' -56 NC_001847.1 + 46790 0.66 0.869372
Target:  5'- cGCCCgcgc--GCCccuCGUUC-CCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGGu--GCAAGcGGGGG- -5'
6352 5' -56 NC_001847.1 + 59647 0.68 0.803306
Target:  5'- cGCUCUUUUgaGCC-CGcUCGCgCCCg -3'
miRNA:   3'- aCGGGAAGAaaCGGuGCaAGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 61955 0.68 0.80955
Target:  5'- gGCCCgcgCgggccgacuccgccGCCGCGUcCGCCUCCu -3'
miRNA:   3'- aCGGGaa-Gaaa-----------CGGUGCAaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 78303 0.67 0.827789
Target:  5'- gUGCUCgggcggCUggGCCGCccccuccccgCGCCCCCa -3'
miRNA:   3'- -ACGGGaa----GAaaCGGUGcaa-------GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 109936 0.67 0.829485
Target:  5'- aGCCCacc-UUGCCG-GUcUUGCCCCCu -3'
miRNA:   3'- aCGGGaagaAACGGUgCA-AGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 43568 0.67 0.837857
Target:  5'- cGCgCUUCgccgcggGCgACGcgCGCCCCa -3'
miRNA:   3'- aCGgGAAGaaa----CGgUGCaaGCGGGGg -5'
6352 5' -56 NC_001847.1 + 55727 0.67 0.846039
Target:  5'- cGCCC-UCgggcGCCACGgugguccggcUCGCgCCCg -3'
miRNA:   3'- aCGGGaAGaaa-CGGUGCa---------AGCGgGGG- -5'
6352 5' -56 NC_001847.1 + 38649 0.67 0.854023
Target:  5'- aUGCCCgcCgcgUUGCCGUGgcgaCGCCCgCCg -3'
miRNA:   3'- -ACGGGaaGa--AACGGUGCaa--GCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 65649 0.66 0.861803
Target:  5'- cGCCaa-Cg--GCCGCGUgcgCGCCCgCa -3'
miRNA:   3'- aCGGgaaGaaaCGGUGCAa--GCGGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.