Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 3' | -54 | NC_001847.1 | + | 111304 | 0.68 | 0.872715 |
Target: 5'- ---gGCCGgGGgCGGGGCCccuuACGUGGg -3' miRNA: 3'- guaaUGGCgCCaGUCCCGG----UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 14325 | 0.68 | 0.872715 |
Target: 5'- --cUGCuCGCGGU-GGGGCCggGCGUGGu -3' miRNA: 3'- guaAUG-GCGCCAgUCCCGG--UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 48292 | 0.68 | 0.872715 |
Target: 5'- uCGggGCCGUGGcUCAuGGGCUugACGUAGg -3' miRNA: 3'- -GUaaUGGCGCC-AGU-CCCGG--UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 104399 | 0.68 | 0.870443 |
Target: 5'- ---gGCCGCGGUCuacgcccgcccagucGGCCACGUc-- -3' miRNA: 3'- guaaUGGCGCCAGuc-------------CCGGUGCAuuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 119156 | 0.68 | 0.865061 |
Target: 5'- ---cGCCGCGGccgccgCGGGGCgGCGg--- -3' miRNA: 3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 119216 | 0.68 | 0.865061 |
Target: 5'- ---cGCCGCGGccaccgCGGGGCgGCGg--- -3' miRNA: 3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 119096 | 0.68 | 0.865061 |
Target: 5'- ---cGCCGCGGccgccgCGGGGCgGCGg--- -3' miRNA: 3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 32902 | 0.68 | 0.865061 |
Target: 5'- ---gGCCgGCGGggaagcCGGGGCCGCGg--- -3' miRNA: 3'- guaaUGG-CGCCa-----GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 38086 | 0.68 | 0.865061 |
Target: 5'- ---cGCCGCGGUCGGGGaaaGCa---- -3' miRNA: 3'- guaaUGGCGCCAGUCCCgg-UGcauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 121400 | 0.68 | 0.865061 |
Target: 5'- ---gACCGgGGgCAGGaGCUGCGUGGAg -3' miRNA: 3'- guaaUGGCgCCaGUCC-CGGUGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 28851 | 0.68 | 0.857183 |
Target: 5'- --cUGCCGcCGGUCGGGgacGCCAUGg--- -3' miRNA: 3'- guaAUGGC-GCCAGUCC---CGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 127349 | 0.68 | 0.857183 |
Target: 5'- --cUGCCGCGGcaGGGGCgGCGg--- -3' miRNA: 3'- guaAUGGCGCCagUCCCGgUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 131664 | 0.68 | 0.857183 |
Target: 5'- --cUGCCGcCGGUCGGGgacGCCAUGg--- -3' miRNA: 3'- guaAUGGC-GCCAGUCC---CGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 1425 | 0.68 | 0.849089 |
Target: 5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3' miRNA: 3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 104238 | 0.68 | 0.849089 |
Target: 5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3' miRNA: 3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 116892 | 0.68 | 0.849089 |
Target: 5'- ---cGCCGCGGUCGcGGCCAUc---- -3' miRNA: 3'- guaaUGGCGCCAGUcCCGGUGcauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 2785 | 0.68 | 0.840784 |
Target: 5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3' miRNA: 3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 101024 | 0.68 | 0.840784 |
Target: 5'- ---cACCGCGG-CAGGcGCCGCa---- -3' miRNA: 3'- guaaUGGCGCCaGUCC-CGGUGcauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 105598 | 0.68 | 0.840784 |
Target: 5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3' miRNA: 3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 15087 | 0.69 | 0.832278 |
Target: 5'- ---cGCCuGCGGcagCGGGGCCGCGc--- -3' miRNA: 3'- guaaUGG-CGCCa--GUCCCGGUGCauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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