Results 61 - 80 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 3' | -54 | NC_001847.1 | + | 12380 | 0.66 | 0.935916 |
Target: 5'- ---gGCUGCGGccUCGGGG-CGCGUGu- -3' miRNA: 3'- guaaUGGCGCC--AGUCCCgGUGCAUuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 46692 | 0.74 | 0.539728 |
Target: 5'- ---cGCgCGCGGUCGGGGcCCGCGg--- -3' miRNA: 3'- guaaUG-GCGCCAGUCCC-GGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 8491 | 0.68 | 0.872715 |
Target: 5'- ---gGCCGgGGgCGGGGCCccuuACGUGGg -3' miRNA: 3'- guaaUGGCgCCaGUCCCGG----UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 104399 | 0.68 | 0.870443 |
Target: 5'- ---gGCCGCGGUCuacgcccgcccagucGGCCACGUc-- -3' miRNA: 3'- guaaUGGCGCCAGuc-------------CCGGUGCAuuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 75517 | 0.67 | 0.907434 |
Target: 5'- ---gAgCGCGGUCGcGGGCgGCGUc-- -3' miRNA: 3'- guaaUgGCGCCAGU-CCCGgUGCAuuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 32210 | 0.67 | 0.907434 |
Target: 5'- ----cCCGCGGgCGGGGCCGgGg--- -3' miRNA: 3'- guaauGGCGCCaGUCCCGGUgCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 13713 | 0.67 | 0.907434 |
Target: 5'- ---gGCgGCGGUC-GGGCCGCu---- -3' miRNA: 3'- guaaUGgCGCCAGuCCCGGUGcauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 98783 | 0.71 | 0.717675 |
Target: 5'- ---gGCCGCGG-CGGcGCCGCGUGGc -3' miRNA: 3'- guaaUGGCGCCaGUCcCGGUGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 44910 | 0.71 | 0.686588 |
Target: 5'- ---aGCCGCGG-CGGcGGCCGCGa--- -3' miRNA: 3'- guaaUGGCGCCaGUC-CCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 48292 | 0.68 | 0.872715 |
Target: 5'- uCGggGCCGUGGcUCAuGGGCUugACGUAGg -3' miRNA: 3'- -GUaaUGGCGCC-AGU-CCCGG--UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 16582 | 0.71 | 0.686588 |
Target: 5'- ---cAgCGgGGUCGGGGCgGCGUGGGg -3' miRNA: 3'- guaaUgGCgCCAGUCCCGgUGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 102304 | 0.72 | 0.633939 |
Target: 5'- ---cGCCGCGGUCucGGcGGCCACGc--- -3' miRNA: 3'- guaaUGGCGCCAG--UC-CCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 73028 | 0.73 | 0.58124 |
Target: 5'- ---gGCCGCGG-CAGcGGCCGCGg--- -3' miRNA: 3'- guaaUGGCGCCaGUC-CCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 13276 | 0.73 | 0.58124 |
Target: 5'- ---gGCCGCGucCAGGGCCACGUc-- -3' miRNA: 3'- guaaUGGCGCcaGUCCCGGUGCAuuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 2906 | 0.73 | 0.58124 |
Target: 5'- --gUACCGCGcgagCGGGGCCACGg--- -3' miRNA: 3'- guaAUGGCGCca--GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 55314 | 0.75 | 0.483459 |
Target: 5'- ---cGCCGCGGUCGcccacuuccggcagcGGGCCACGg--- -3' miRNA: 3'- guaaUGGCGCCAGU---------------CCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 133724 | 0.75 | 0.460211 |
Target: 5'- --gUGCCugGCGGgcgCGGGGCCGCGUGc- -3' miRNA: 3'- guaAUGG--CGCCa--GUCCCGGUGCAUuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 24220 | 0.78 | 0.322483 |
Target: 5'- ----cCCGCGGUuguaCGGGGCCACGUGGGu -3' miRNA: 3'- guaauGGCGCCA----GUCCCGGUGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 126005 | 1.06 | 0.005214 |
Target: 5'- cCAUUACCGCGGUCAGGGCCACGUAAAa -3' miRNA: 3'- -GUAAUGGCGCCAGUCCCGGUGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 56542 | 0.71 | 0.695972 |
Target: 5'- --gUGCCGCGGcggCAGcuccagggagcgcGGCCGCGUGAu -3' miRNA: 3'- guaAUGGCGCCa--GUC-------------CCGGUGCAUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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