miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 15087 0.69 0.832278
Target:  5'- ---cGCCuGCGGcagCGGGGCCGCGc--- -3'
miRNA:   3'- guaaUGG-CGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 15012 0.75 0.479545
Target:  5'- ---gGCCGCGGU-GGGGCCGCGcGAGc -3'
miRNA:   3'- guaaUGGCGCCAgUCCCGGUGCaUUU- -5'
6353 3' -54 NC_001847.1 + 68225 0.75 0.48936
Target:  5'- ---gGCCGCGG-CGGGGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 100643 0.71 0.707378
Target:  5'- ---gGCUGCGGcgcCAGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 80470 0.66 0.935916
Target:  5'- ---cGCCGCcGUC-GGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 24512 0.66 0.935916
Target:  5'- ---cGCCGUGGgcgUCGGGGCuCGCGc--- -3'
miRNA:   3'- guaaUGGCGCC---AGUCCCG-GUGCauuu -5'
6353 3' -54 NC_001847.1 + 117917 0.66 0.930729
Target:  5'- gGUUGaCGCGGUguGGGgCaACGUAAGc -3'
miRNA:   3'- gUAAUgGCGCCAguCCCgG-UGCAUUU- -5'
6353 3' -54 NC_001847.1 + 34133 0.66 0.91959
Target:  5'- --cUGCCGCGGUgGccGCCGCGgcGAg -3'
miRNA:   3'- guaAUGGCGCCAgUccCGGUGCauUU- -5'
6353 3' -54 NC_001847.1 + 4911 0.67 0.907434
Target:  5'- ---cGCaCGCGGUCguuAGGGCCGCc---- -3'
miRNA:   3'- guaaUG-GCGCCAG---UCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 94408 0.67 0.894275
Target:  5'- --gUACCGCGa-CGGGGCCAUGc--- -3'
miRNA:   3'- guaAUGGCGCcaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 30039 0.67 0.887327
Target:  5'- ---gGCCGCGGcCGuGGGCgACGUu-- -3'
miRNA:   3'- guaaUGGCGCCaGU-CCCGgUGCAuuu -5'
6353 3' -54 NC_001847.1 + 111304 0.68 0.872715
Target:  5'- ---gGCCGgGGgCGGGGCCccuuACGUGGg -3'
miRNA:   3'- guaaUGGCgCCaGUCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 104238 0.68 0.849089
Target:  5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 97463 0.69 0.81469
Target:  5'- ---aGCCGCGc-CAGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGCcaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 132037 0.7 0.76779
Target:  5'- ---gGCCGCGG-C-GGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 98739 0.67 0.900978
Target:  5'- cCGggGCCGgGGcCGGGGCCGgGg--- -3'
miRNA:   3'- -GUaaUGGCgCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 133724 0.75 0.460211
Target:  5'- --gUGCCugGCGGgcgCGGGGCCGCGUGc- -3'
miRNA:   3'- guaAUGG--CGCCa--GUCCCGGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 104399 0.68 0.870443
Target:  5'- ---gGCCGCGGUCuacgcccgcccagucGGCCACGUc-- -3'
miRNA:   3'- guaaUGGCGCCAGuc-------------CCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 13713 0.67 0.907434
Target:  5'- ---gGCgGCGGUC-GGGCCGCu---- -3'
miRNA:   3'- guaaUGgCGCCAGuCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 38086 0.68 0.865061
Target:  5'- ---cGCCGCGGUCGGGGaaaGCa---- -3'
miRNA:   3'- guaaUGGCGCCAGUCCCgg-UGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.