miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 59 0.66 0.925287
Target:  5'- gCAUUGCgGCGGgcgGGGGCgGgGUGGGg -3'
miRNA:   3'- -GUAAUGgCGCCag-UCCCGgUgCAUUU- -5'
6353 3' -54 NC_001847.1 + 133534 0.66 0.940849
Target:  5'- --cUGCCGCGGcgCAGuGcGCCGCGc--- -3'
miRNA:   3'- guaAUGGCGCCa-GUC-C-CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 135023 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 13109 0.66 0.930729
Target:  5'- -uUUGUCGCGGcCGGGGCgCGCGg--- -3'
miRNA:   3'- guAAUGGCGCCaGUCCCG-GUGCauuu -5'
6353 3' -54 NC_001847.1 + 76411 0.66 0.935916
Target:  5'- ---gGCCGCGG-CGGGGgcaccCCGCGgcGGg -3'
miRNA:   3'- guaaUGGCGCCaGUCCC-----GGUGCauUU- -5'
6353 3' -54 NC_001847.1 + 80470 0.66 0.935916
Target:  5'- ---cGCCGCcGUC-GGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 36179 0.66 0.940849
Target:  5'- -cUUGCgGCGGUgcgCGGcgaGGCCGCGUAc- -3'
miRNA:   3'- guAAUGgCGCCA---GUC---CCGGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 4911 0.67 0.907434
Target:  5'- ---cGCaCGCGGUCguuAGGGCCGCc---- -3'
miRNA:   3'- guaaUG-GCGCCAG---UCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 73861 0.66 0.930729
Target:  5'- ---cGCCGCGGUgCGcGGGgCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCgGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 105910 0.69 0.805626
Target:  5'- ---gGCCGCGGcCGGcaGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC--CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 89527 0.71 0.731959
Target:  5'- --cUGCCGCcgggcggcagcgacgGGUCAgauuggcccgcGGGCCGCGUGAGc -3'
miRNA:   3'- guaAUGGCG---------------CCAGU-----------CCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 104238 0.68 0.849089
Target:  5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 22387 0.67 0.894275
Target:  5'- ----cCCGCGGggcCGGGGUCGCGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 104738 0.67 0.894275
Target:  5'- ---cGCCGCGGcgCGGcGGCCACu---- -3'
miRNA:   3'- guaaUGGCGCCa-GUC-CCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 121400 0.68 0.865061
Target:  5'- ---gACCGgGGgCAGGaGCUGCGUGGAg -3'
miRNA:   3'- guaaUGGCgCCaGUCC-CGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 68225 0.75 0.48936
Target:  5'- ---gGCCGCGG-CGGGGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 85244 0.67 0.913638
Target:  5'- ---cACCGCGG-CcGGGCCcagcACGUAGc -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 2906 0.73 0.58124
Target:  5'- --gUACCGCGcgagCGGGGCCACGg--- -3'
miRNA:   3'- guaAUGGCGCca--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 46692 0.74 0.539728
Target:  5'- ---cGCgCGCGGUCGGGGcCCGCGg--- -3'
miRNA:   3'- guaaUG-GCGCCAGUCCC-GGUGCauuu -5'
6353 3' -54 NC_001847.1 + 48292 0.68 0.872715
Target:  5'- uCGggGCCGUGGcUCAuGGGCUugACGUAGg -3'
miRNA:   3'- -GUaaUGGCGCC-AGU-CCCGG--UGCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.