Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 3' | -54 | NC_001847.1 | + | 111304 | 0.68 | 0.872715 |
Target: 5'- ---gGCCGgGGgCGGGGCCccuuACGUGGg -3' miRNA: 3'- guaaUGGCgCCaGUCCCGG----UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 104238 | 0.68 | 0.849089 |
Target: 5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3' miRNA: 3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 43225 | 0.7 | 0.74806 |
Target: 5'- cCGUUGCCcggugGCGGUgGGGGCgCGCGg--- -3' miRNA: 3'- -GUAAUGG-----CGCCAgUCCCG-GUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 15148 | 0.75 | 0.48936 |
Target: 5'- --cUACUGCGcGUCGGGGCCGCuUGGAc -3' miRNA: 3'- guaAUGGCGC-CAGUCCCGGUGcAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 70689 | 0.67 | 0.907434 |
Target: 5'- ---gACCGCGGgccCGGGGCUggcCGUGGc -3' miRNA: 3'- guaaUGGCGCCa--GUCCCGGu--GCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 65050 | 0.67 | 0.894275 |
Target: 5'- -uUUGCCGCGGUguGG-CC-CGUGu- -3' miRNA: 3'- guAAUGGCGCCAguCCcGGuGCAUuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 15087 | 0.69 | 0.832278 |
Target: 5'- ---cGCCuGCGGcagCGGGGCCGCGc--- -3' miRNA: 3'- guaaUGG-CGCCa--GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 15012 | 0.75 | 0.479545 |
Target: 5'- ---gGCCGCGGU-GGGGCCGCGcGAGc -3' miRNA: 3'- guaaUGGCGCCAgUCCCGGUGCaUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 30039 | 0.67 | 0.887327 |
Target: 5'- ---gGCCGCGGcCGuGGGCgACGUu-- -3' miRNA: 3'- guaaUGGCGCCaGU-CCCGgUGCAuuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 134129 | 0.76 | 0.4507 |
Target: 5'- ---cGCCGCGGgCGGcGGCCugGUGGAg -3' miRNA: 3'- guaaUGGCGCCaGUC-CCGGugCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 105598 | 0.68 | 0.840784 |
Target: 5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3' miRNA: 3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 120838 | 0.68 | 0.872715 |
Target: 5'- ---aGCaGCGGgagCGGGGCCGCGa--- -3' miRNA: 3'- guaaUGgCGCCa--GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 97463 | 0.69 | 0.81469 |
Target: 5'- ---aGCCGCGc-CAGGGCCGCGc--- -3' miRNA: 3'- guaaUGGCGCcaGUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 132037 | 0.7 | 0.76779 |
Target: 5'- ---gGCCGCGG-C-GGGCCGCGg--- -3' miRNA: 3'- guaaUGGCGCCaGuCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 100643 | 0.71 | 0.707378 |
Target: 5'- ---gGCUGCGGcgcCAGGGCCGCGc--- -3' miRNA: 3'- guaaUGGCGCCa--GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 68225 | 0.75 | 0.48936 |
Target: 5'- ---gGCCGCGG-CGGGGCCGCa---- -3' miRNA: 3'- guaaUGGCGCCaGUCCCGGUGcauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 34133 | 0.66 | 0.91959 |
Target: 5'- --cUGCCGCGGUgGccGCCGCGgcGAg -3' miRNA: 3'- guaAUGGCGCCAgUccCGGUGCauUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 4911 | 0.67 | 0.907434 |
Target: 5'- ---cGCaCGCGGUCguuAGGGCCGCc---- -3' miRNA: 3'- guaaUG-GCGCCAG---UCCCGGUGcauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 104448 | 0.67 | 0.900978 |
Target: 5'- ---cACCGCGGcgcgCAGGuaCACGUGc- -3' miRNA: 3'- guaaUGGCGCCa---GUCCcgGUGCAUuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 22387 | 0.67 | 0.894275 |
Target: 5'- ----cCCGCGGggcCGGGGUCGCGa--- -3' miRNA: 3'- guaauGGCGCCa--GUCCCGGUGCauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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