miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 127033 0.78 0.322483
Target:  5'- ----cCCGCGGUuguaCGGGGCCACGUGGGu -3'
miRNA:   3'- guaauGGCGCCA----GUCCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 104738 0.67 0.894275
Target:  5'- ---cGCCGCGGcgCGGcGGCCACu---- -3'
miRNA:   3'- guaaUGGCGCCa-GUC-CCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 94408 0.67 0.894275
Target:  5'- --gUACCGCGa-CGGGGCCAUGc--- -3'
miRNA:   3'- guaAUGGCGCcaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 131664 0.68 0.857183
Target:  5'- --cUGCCGcCGGUCGGGgacGCCAUGg--- -3'
miRNA:   3'- guaAUGGC-GCCAGUCC---CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 44687 0.69 0.796395
Target:  5'- ---aGCCGCGGau-GGGCCGCGcGGAc -3'
miRNA:   3'- guaaUGGCGCCaguCCCGGUGCaUUU- -5'
6353 3' -54 NC_001847.1 + 10386 0.67 0.907434
Target:  5'- ---cGCuCGCGG-CGGGGCCGCu---- -3'
miRNA:   3'- guaaUG-GCGCCaGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 98739 0.67 0.900978
Target:  5'- cCGggGCCGgGGcCGGGGCCGgGg--- -3'
miRNA:   3'- -GUaaUGGCgCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 59179 0.71 0.717675
Target:  5'- ---gGCgGCGGUCgagGGGGCCGuCGUAGc -3'
miRNA:   3'- guaaUGgCGCCAG---UCCCGGU-GCAUUu -5'
6353 3' -54 NC_001847.1 + 81038 0.67 0.880139
Target:  5'- ---cGCCGCGGacugCGGGGgCgACGUGGg -3'
miRNA:   3'- guaaUGGCGCCa---GUCCC-GgUGCAUUu -5'
6353 3' -54 NC_001847.1 + 111304 0.68 0.872715
Target:  5'- ---gGCCGgGGgCGGGGCCccuuACGUGGg -3'
miRNA:   3'- guaaUGGCgCCaGUCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 105719 0.73 0.58124
Target:  5'- --gUACCGCGcgagCGGGGCCACGg--- -3'
miRNA:   3'- guaAUGGCGCca--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 83238 0.73 0.570785
Target:  5'- ---cGCCGCGGcCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 59 0.66 0.925287
Target:  5'- gCAUUGCgGCGGgcgGGGGCgGgGUGGGg -3'
miRNA:   3'- -GUAAUGgCGCCag-UCCCGgUgCAUUU- -5'
6353 3' -54 NC_001847.1 + 135023 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 22387 0.67 0.894275
Target:  5'- ----cCCGCGGggcCGGGGUCGCGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 101168 0.69 0.823577
Target:  5'- cCGggGCCGgGGUCGGGG-CGCGg--- -3'
miRNA:   3'- -GUaaUGGCgCCAGUCCCgGUGCauuu -5'
6353 3' -54 NC_001847.1 + 105910 0.69 0.805626
Target:  5'- ---gGCCGCGGcCGGcaGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC--CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 68225 0.75 0.48936
Target:  5'- ---gGCCGCGG-CGGGGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 121400 0.68 0.865061
Target:  5'- ---gACCGgGGgCAGGaGCUGCGUGGAg -3'
miRNA:   3'- guaaUGGCgCCaGUCC-CGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 64175 0.67 0.880139
Target:  5'- --cUugCGCGGaCGGGGCgGCGg--- -3'
miRNA:   3'- guaAugGCGCCaGUCCCGgUGCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.