miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 16582 0.71 0.686588
Target:  5'- ---cAgCGgGGUCGGGGCgGCGUGGGg -3'
miRNA:   3'- guaaUgGCgCCAGUCCCGgUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 22387 0.67 0.894275
Target:  5'- ----cCCGCGGggcCGGGGUCGCGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 22421 0.66 0.940849
Target:  5'- ----uCCGCGGgggCGGGGCC-CGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGuGCauuu -5'
6353 3' -54 NC_001847.1 + 24220 0.78 0.322483
Target:  5'- ----cCCGCGGUuguaCGGGGCCACGUGGGu -3'
miRNA:   3'- guaauGGCGCCA----GUCCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 24512 0.66 0.935916
Target:  5'- ---cGCCGUGGgcgUCGGGGCuCGCGc--- -3'
miRNA:   3'- guaaUGGCGCC---AGUCCCG-GUGCauuu -5'
6353 3' -54 NC_001847.1 + 28851 0.68 0.857183
Target:  5'- --cUGCCGcCGGUCGGGgacGCCAUGg--- -3'
miRNA:   3'- guaAUGGC-GCCAGUCC---CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 29224 0.7 0.76779
Target:  5'- ---gGCCGCGG-C-GGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 30039 0.67 0.887327
Target:  5'- ---gGCCGCGGcCGuGGGCgACGUu-- -3'
miRNA:   3'- guaaUGGCGCCaGU-CCCGgUGCAuuu -5'
6353 3' -54 NC_001847.1 + 30721 0.66 0.940849
Target:  5'- --cUGCCGCGGcgCAGuGcGCCGCGc--- -3'
miRNA:   3'- guaAUGGCGCCa-GUC-C-CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 31316 0.76 0.4507
Target:  5'- ---cGCCGCGGgCGGcGGCCugGUGGAg -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGugCAUUU- -5'
6353 3' -54 NC_001847.1 + 31431 0.66 0.930729
Target:  5'- ---gGCgGCGGcCGGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGgCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 31744 0.66 0.940849
Target:  5'- ---gGCCGCGG--AGGGCCAgGa--- -3'
miRNA:   3'- guaaUGGCGCCagUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 31959 0.69 0.823577
Target:  5'- --cUGCCGCGGcggCGgcGGGCCcCGUGGAc -3'
miRNA:   3'- guaAUGGCGCCa--GU--CCCGGuGCAUUU- -5'
6353 3' -54 NC_001847.1 + 32210 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 32902 0.68 0.865061
Target:  5'- ---gGCCgGCGGggaagcCGGGGCCGCGg--- -3'
miRNA:   3'- guaaUGG-CGCCa-----GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 34133 0.66 0.91959
Target:  5'- --cUGCCGCGGUgGccGCCGCGgcGAg -3'
miRNA:   3'- guaAUGGCGCCAgUccCGGUGCauUU- -5'
6353 3' -54 NC_001847.1 + 34446 0.67 0.900978
Target:  5'- ---gGCCGCGGaCGaGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUcCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 36179 0.66 0.940849
Target:  5'- -cUUGCgGCGGUgcgCGGcgaGGCCGCGUAc- -3'
miRNA:   3'- guAAUGgCGCCA---GUC---CCGGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 38086 0.68 0.865061
Target:  5'- ---cGCCGCGGUCGGGGaaaGCa---- -3'
miRNA:   3'- guaaUGGCGCCAGUCCCgg-UGcauuu -5'
6353 3' -54 NC_001847.1 + 38977 0.69 0.81469
Target:  5'- ---gGCCGCGG-CGGGGCUuaGUAGAc -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGugCAUUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.