miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 118895 0.67 0.887327
Target:  5'- aCGggGCCGgGGcCGGGGCCGgGg--- -3'
miRNA:   3'- -GUaaUGGCgCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 117917 0.66 0.930729
Target:  5'- gGUUGaCGCGGUguGGGgCaACGUAAGc -3'
miRNA:   3'- gUAAUgGCGCCAguCCCgG-UGCAUUU- -5'
6353 3' -54 NC_001847.1 + 116892 0.68 0.849089
Target:  5'- ---cGCCGCGGUCGcGGCCAUc---- -3'
miRNA:   3'- guaaUGGCGCCAGUcCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 115113 0.67 0.880139
Target:  5'- cCAggGCgGCGGccgCAGGGCCGCc---- -3'
miRNA:   3'- -GUaaUGgCGCCa--GUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 114745 0.66 0.935916
Target:  5'- --gUGCCgGCGGUCGcGGUCGCGg--- -3'
miRNA:   3'- guaAUGG-CGCCAGUcCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 111304 0.68 0.872715
Target:  5'- ---gGCCGgGGgCGGGGCCccuuACGUGGg -3'
miRNA:   3'- guaaUGGCgCCaGUCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 108647 0.67 0.900978
Target:  5'- --cUGCagaaGUGGcCGGGGCCGCGg--- -3'
miRNA:   3'- guaAUGg---CGCCaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 106515 0.66 0.930729
Target:  5'- aCAcgGCCGCGGgccccgCGGccGCCGCGUAGc -3'
miRNA:   3'- -GUaaUGGCGCCa-----GUCc-CGGUGCAUUu -5'
6353 3' -54 NC_001847.1 + 105910 0.69 0.805626
Target:  5'- ---gGCCGCGGcCGGcaGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC--CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 105829 0.66 0.940849
Target:  5'- ---cACCGC-GUCGcGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGU-CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 105719 0.73 0.58124
Target:  5'- --gUACCGCGcgagCGGGGCCACGg--- -3'
miRNA:   3'- guaAUGGCGCca--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 105598 0.68 0.840784
Target:  5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3'
miRNA:   3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 104738 0.67 0.894275
Target:  5'- ---cGCCGCGGcgCGGcGGCCACu---- -3'
miRNA:   3'- guaaUGGCGCCa-GUC-CCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 104448 0.67 0.900978
Target:  5'- ---cACCGCGGcgcgCAGGuaCACGUGc- -3'
miRNA:   3'- guaaUGGCGCCa---GUCCcgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 104399 0.68 0.870443
Target:  5'- ---gGCCGCGGUCuacgcccgcccagucGGCCACGUc-- -3'
miRNA:   3'- guaaUGGCGCCAGuc-------------CCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 104238 0.68 0.849089
Target:  5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 102843 0.7 0.76779
Target:  5'- cCGUU-CCGCGGcggcgucgCGGGGCCGCGc--- -3'
miRNA:   3'- -GUAAuGGCGCCa-------GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 102304 0.72 0.633939
Target:  5'- ---cGCCGCGGUCucGGcGGCCACGc--- -3'
miRNA:   3'- guaaUGGCGCCAG--UC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 101168 0.69 0.823577
Target:  5'- cCGggGCCGgGGUCGGGG-CGCGg--- -3'
miRNA:   3'- -GUaaUGGCgCCAGUCCCgGUGCauuu -5'
6353 3' -54 NC_001847.1 + 101024 0.68 0.840784
Target:  5'- ---cACCGCGG-CAGGcGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCC-CGGUGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.