miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 31431 0.66 0.930729
Target:  5'- ---gGCgGCGGcCGGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGgCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 12380 0.66 0.935916
Target:  5'- ---gGCUGCGGccUCGGGG-CGCGUGu- -3'
miRNA:   3'- guaaUGGCGCC--AGUCCCgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 44867 0.66 0.935916
Target:  5'- aCGUcGCCGCGccgcUCAaaGGCCGCGUGAAc -3'
miRNA:   3'- -GUAaUGGCGCc---AGUc-CCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 22421 0.66 0.940849
Target:  5'- ----uCCGCGGgggCGGGGCC-CGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGuGCauuu -5'
6353 3' -54 NC_001847.1 + 62735 0.66 0.940849
Target:  5'- ---gGCCGUGGccguccccgcgUCGGGGcCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCC-----------AGUCCC-GGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 3016 0.66 0.940849
Target:  5'- ---cACCGC-GUCGcGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGU-CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 30721 0.66 0.940849
Target:  5'- --cUGCCGCGGcgCAGuGcGCCGCGc--- -3'
miRNA:   3'- guaAUGGCGCCa-GUC-C-CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 31744 0.66 0.940849
Target:  5'- ---gGCCGCGG--AGGGCCAgGa--- -3'
miRNA:   3'- guaaUGGCGCCagUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 44047 0.66 0.91959
Target:  5'- ---aGgCGCGcGUCGGGGCCGCc---- -3'
miRNA:   3'- guaaUgGCGC-CAGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 135023 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 13713 0.67 0.907434
Target:  5'- ---gGCgGCGGUC-GGGCCGCu---- -3'
miRNA:   3'- guaaUGgCGCCAGuCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 32210 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 75517 0.67 0.907434
Target:  5'- ---gAgCGCGGUCGcGGGCgGCGUc-- -3'
miRNA:   3'- guaaUgGCGCCAGU-CCCGgUGCAuuu -5'
6353 3' -54 NC_001847.1 + 119734 0.67 0.887327
Target:  5'- gCcgUGCCGCGcucCAGGGCCGCccaGUGGc -3'
miRNA:   3'- -GuaAUGGCGCca-GUCCCGGUG---CAUUu -5'
6353 3' -54 NC_001847.1 + 118895 0.67 0.887327
Target:  5'- aCGggGCCGgGGcCGGGGCCGgGg--- -3'
miRNA:   3'- -GUaaUGGCgCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 51654 0.67 0.883042
Target:  5'- ---cGCCGCGGcgcugcgcccgcaaCAGGGCgGCGUAc- -3'
miRNA:   3'- guaaUGGCGCCa-------------GUCCCGgUGCAUuu -5'
6353 3' -54 NC_001847.1 + 115113 0.67 0.880139
Target:  5'- cCAggGCgGCGGccgCAGGGCCGCc---- -3'
miRNA:   3'- -GUaaUGgCGCCa--GUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 85244 0.67 0.913638
Target:  5'- ---cACCGCGG-CcGGGCCcagcACGUAGc -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 4911 0.67 0.907434
Target:  5'- ---cGCaCGCGGUCguuAGGGCCGCc---- -3'
miRNA:   3'- guaaUG-GCGCCAG---UCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 10386 0.67 0.907434
Target:  5'- ---cGCuCGCGG-CGGGGCCGCu---- -3'
miRNA:   3'- guaaUG-GCGCCaGUCCCGGUGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.