Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 3' | -54 | NC_001847.1 | + | 31744 | 0.66 | 0.940849 |
Target: 5'- ---gGCCGCGG--AGGGCCAgGa--- -3' miRNA: 3'- guaaUGGCGCCagUCCCGGUgCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 24512 | 0.66 | 0.935916 |
Target: 5'- ---cGCCGUGGgcgUCGGGGCuCGCGc--- -3' miRNA: 3'- guaaUGGCGCC---AGUCCCG-GUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 76411 | 0.66 | 0.935916 |
Target: 5'- ---gGCCGCGG-CGGGGgcaccCCGCGgcGGg -3' miRNA: 3'- guaaUGGCGCCaGUCCC-----GGUGCauUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 134557 | 0.66 | 0.940849 |
Target: 5'- ---gGCCGCGG--AGGGCCAgGa--- -3' miRNA: 3'- guaaUGGCGCCagUCCCGGUgCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 59 | 0.66 | 0.925287 |
Target: 5'- gCAUUGCgGCGGgcgGGGGCgGgGUGGGg -3' miRNA: 3'- -GUAAUGgCGCCag-UCCCGgUgCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 13109 | 0.66 | 0.930729 |
Target: 5'- -uUUGUCGCGGcCGGGGCgCGCGg--- -3' miRNA: 3'- guAAUGGCGCCaGUCCCG-GUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 106515 | 0.66 | 0.930729 |
Target: 5'- aCAcgGCCGCGGgccccgCGGccGCCGCGUAGc -3' miRNA: 3'- -GUaaUGGCGCCa-----GUCc-CGGUGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 117917 | 0.66 | 0.930729 |
Target: 5'- gGUUGaCGCGGUguGGGgCaACGUAAGc -3' miRNA: 3'- gUAAUgGCGCCAguCCCgG-UGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 134244 | 0.66 | 0.930729 |
Target: 5'- ---gGCgGCGGcCGGcGGCCGCGg--- -3' miRNA: 3'- guaaUGgCGCCaGUC-CCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 34133 | 0.66 | 0.91959 |
Target: 5'- --cUGCCGCGGUgGccGCCGCGgcGAg -3' miRNA: 3'- guaAUGGCGCCAgUccCGGUGCauUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 44047 | 0.66 | 0.91959 |
Target: 5'- ---aGgCGCGcGUCGGGGCCGCc---- -3' miRNA: 3'- guaaUgGCGC-CAGUCCCGGUGcauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 47857 | 0.66 | 0.91959 |
Target: 5'- ---gGCCGCGGcCGcGGGCCGuCGg--- -3' miRNA: 3'- guaaUGGCGCCaGU-CCCGGU-GCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 30721 | 0.66 | 0.940849 |
Target: 5'- --cUGCCGCGGcgCAGuGcGCCGCGc--- -3' miRNA: 3'- guaAUGGCGCCa-GUC-C-CGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 3016 | 0.66 | 0.940849 |
Target: 5'- ---cACCGC-GUCGcGGGCCGCGc--- -3' miRNA: 3'- guaaUGGCGcCAGU-CCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 62735 | 0.66 | 0.940849 |
Target: 5'- ---gGCCGUGGccguccccgcgUCGGGGcCCGCGUc-- -3' miRNA: 3'- guaaUGGCGCC-----------AGUCCC-GGUGCAuuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 22421 | 0.66 | 0.940849 |
Target: 5'- ----uCCGCGGgggCGGGGCC-CGa--- -3' miRNA: 3'- guaauGGCGCCa--GUCCCGGuGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 44867 | 0.66 | 0.935916 |
Target: 5'- aCGUcGCCGCGccgcUCAaaGGCCGCGUGAAc -3' miRNA: 3'- -GUAaUGGCGCc---AGUc-CCGGUGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 12380 | 0.66 | 0.935916 |
Target: 5'- ---gGCUGCGGccUCGGGG-CGCGUGu- -3' miRNA: 3'- guaaUGGCGCC--AGUCCCgGUGCAUuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 31431 | 0.66 | 0.930729 |
Target: 5'- ---gGCgGCGGcCGGcGGCCGCGg--- -3' miRNA: 3'- guaaUGgCGCCaGUC-CCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 3702 | 0.66 | 0.930729 |
Target: 5'- aCAcgGCCGCGGgccccgCGGccGCCGCGUAGc -3' miRNA: 3'- -GUaaUGGCGCCa-----GUCc-CGGUGCAUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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