miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 127033 0.78 0.322483
Target:  5'- ----cCCGCGGUuguaCGGGGCCACGUGGGu -3'
miRNA:   3'- guaauGGCGCCA----GUCCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 15087 0.69 0.832278
Target:  5'- ---cGCCuGCGGcagCGGGGCCGCGc--- -3'
miRNA:   3'- guaaUGG-CGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 104238 0.68 0.849089
Target:  5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 134557 0.66 0.940849
Target:  5'- ---gGCCGCGG--AGGGCCAgGa--- -3'
miRNA:   3'- guaaUGGCGCCagUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 68225 0.75 0.48936
Target:  5'- ---gGCCGCGG-CGGGGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 83238 0.73 0.570785
Target:  5'- ---cGCCGCGGcCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 100643 0.71 0.707378
Target:  5'- ---gGCUGCGGcgcCAGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 59179 0.71 0.717675
Target:  5'- ---gGCgGCGGUCgagGGGGCCGuCGUAGc -3'
miRNA:   3'- guaaUGgCGCCAG---UCCCGGU-GCAUUu -5'
6353 3' -54 NC_001847.1 + 132037 0.7 0.76779
Target:  5'- ---gGCCGCGG-C-GGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 31959 0.69 0.823577
Target:  5'- --cUGCCGCGGcggCGgcGGGCCcCGUGGAc -3'
miRNA:   3'- guaAUGGCGCCa--GU--CCCGGuGCAUUU- -5'
6353 3' -54 NC_001847.1 + 105910 0.69 0.805626
Target:  5'- ---gGCCGCGGcCGGcaGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC--CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 43225 0.7 0.74806
Target:  5'- cCGUUGCCcggugGCGGUgGGGGCgCGCGg--- -3'
miRNA:   3'- -GUAAUGG-----CGCCAgUCCCG-GUGCauuu -5'
6353 3' -54 NC_001847.1 + 134129 0.76 0.4507
Target:  5'- ---cGCCGCGGgCGGcGGCCugGUGGAg -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGugCAUUU- -5'
6353 3' -54 NC_001847.1 + 97463 0.69 0.81469
Target:  5'- ---aGCCGCGc-CAGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGCcaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 15012 0.75 0.479545
Target:  5'- ---gGCCGCGGU-GGGGCCGCGcGAGc -3'
miRNA:   3'- guaaUGGCGCCAgUCCCGGUGCaUUU- -5'
6353 3' -54 NC_001847.1 + 89527 0.71 0.731959
Target:  5'- --cUGCCGCcgggcggcagcgacgGGUCAgauuggcccgcGGGCCGCGUGAGc -3'
miRNA:   3'- guaAUGGCG---------------CCAGU-----------CCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 101168 0.69 0.823577
Target:  5'- cCGggGCCGgGGUCGGGG-CGCGg--- -3'
miRNA:   3'- -GUaaUGGCgCCAGUCCCgGUGCauuu -5'
6353 3' -54 NC_001847.1 + 105598 0.68 0.840784
Target:  5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3'
miRNA:   3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 15148 0.75 0.48936
Target:  5'- --cUACUGCGcGUCGGGGCCGCuUGGAc -3'
miRNA:   3'- guaAUGGCGC-CAGUCCCGGUGcAUUU- -5'
6353 3' -54 NC_001847.1 + 105719 0.73 0.58124
Target:  5'- --gUACCGCGcgagCGGGGCCACGg--- -3'
miRNA:   3'- guaAUGGCGCca--GUCCCGGUGCauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.