Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6353 | 3' | -54 | NC_001847.1 | + | 127033 | 0.78 | 0.322483 |
Target: 5'- ----cCCGCGGUuguaCGGGGCCACGUGGGu -3' miRNA: 3'- guaauGGCGCCA----GUCCCGGUGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 15087 | 0.69 | 0.832278 |
Target: 5'- ---cGCCuGCGGcagCGGGGCCGCGc--- -3' miRNA: 3'- guaaUGG-CGCCa--GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 104238 | 0.68 | 0.849089 |
Target: 5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3' miRNA: 3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 134557 | 0.66 | 0.940849 |
Target: 5'- ---gGCCGCGG--AGGGCCAgGa--- -3' miRNA: 3'- guaaUGGCGCCagUCCCGGUgCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 68225 | 0.75 | 0.48936 |
Target: 5'- ---gGCCGCGG-CGGGGCCGCa---- -3' miRNA: 3'- guaaUGGCGCCaGUCCCGGUGcauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 83238 | 0.73 | 0.570785 |
Target: 5'- ---cGCCGCGGcCGGGGCgGCGg--- -3' miRNA: 3'- guaaUGGCGCCaGUCCCGgUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 100643 | 0.71 | 0.707378 |
Target: 5'- ---gGCUGCGGcgcCAGGGCCGCGc--- -3' miRNA: 3'- guaaUGGCGCCa--GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 59179 | 0.71 | 0.717675 |
Target: 5'- ---gGCgGCGGUCgagGGGGCCGuCGUAGc -3' miRNA: 3'- guaaUGgCGCCAG---UCCCGGU-GCAUUu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 132037 | 0.7 | 0.76779 |
Target: 5'- ---gGCCGCGG-C-GGGCCGCGg--- -3' miRNA: 3'- guaaUGGCGCCaGuCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 31959 | 0.69 | 0.823577 |
Target: 5'- --cUGCCGCGGcggCGgcGGGCCcCGUGGAc -3' miRNA: 3'- guaAUGGCGCCa--GU--CCCGGuGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 105910 | 0.69 | 0.805626 |
Target: 5'- ---gGCCGCGGcCGGcaGGCCGCGg--- -3' miRNA: 3'- guaaUGGCGCCaGUC--CCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 43225 | 0.7 | 0.74806 |
Target: 5'- cCGUUGCCcggugGCGGUgGGGGCgCGCGg--- -3' miRNA: 3'- -GUAAUGG-----CGCCAgUCCCG-GUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 134129 | 0.76 | 0.4507 |
Target: 5'- ---cGCCGCGGgCGGcGGCCugGUGGAg -3' miRNA: 3'- guaaUGGCGCCaGUC-CCGGugCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 97463 | 0.69 | 0.81469 |
Target: 5'- ---aGCCGCGc-CAGGGCCGCGc--- -3' miRNA: 3'- guaaUGGCGCcaGUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 15012 | 0.75 | 0.479545 |
Target: 5'- ---gGCCGCGGU-GGGGCCGCGcGAGc -3' miRNA: 3'- guaaUGGCGCCAgUCCCGGUGCaUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 89527 | 0.71 | 0.731959 |
Target: 5'- --cUGCCGCcgggcggcagcgacgGGUCAgauuggcccgcGGGCCGCGUGAGc -3' miRNA: 3'- guaAUGGCG---------------CCAGU-----------CCCGGUGCAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 101168 | 0.69 | 0.823577 |
Target: 5'- cCGggGCCGgGGUCGGGG-CGCGg--- -3' miRNA: 3'- -GUaaUGGCgCCAGUCCCgGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 105598 | 0.68 | 0.840784 |
Target: 5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3' miRNA: 3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 15148 | 0.75 | 0.48936 |
Target: 5'- --cUACUGCGcGUCGGGGCCGCuUGGAc -3' miRNA: 3'- guaAUGGCGC-CAGUCCCGGUGcAUUU- -5' |
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6353 | 3' | -54 | NC_001847.1 | + | 105719 | 0.73 | 0.58124 |
Target: 5'- --gUACCGCGcgagCGGGGCCACGg--- -3' miRNA: 3'- guaAUGGCGCca--GUCCCGGUGCauuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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