miRNA display CGI


Results 1 - 20 of 119 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 62689 0.67 0.894275
Target:  5'- ---cGCCGUGGUgCAGcGCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCCA-GUCcCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 75517 0.67 0.907434
Target:  5'- ---gAgCGCGGUCGcGGGCgGCGUc-- -3'
miRNA:   3'- guaaUgGCGCCAGU-CCCGgUGCAuuu -5'
6353 3' -54 NC_001847.1 + 32210 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 13713 0.67 0.907434
Target:  5'- ---gGCgGCGGUC-GGGCCGCu---- -3'
miRNA:   3'- guaaUGgCGCCAGuCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 120032 0.67 0.900978
Target:  5'- ---cGCCGCcGUCAGGGCCGu----- -3'
miRNA:   3'- guaaUGGCGcCAGUCCCGGUgcauuu -5'
6353 3' -54 NC_001847.1 + 108647 0.67 0.900978
Target:  5'- --cUGCagaaGUGGcCGGGGCCGCGg--- -3'
miRNA:   3'- guaAUGg---CGCCaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 1635 0.67 0.900978
Target:  5'- ---cACCGCGGcgcgCAGGuaCACGUGc- -3'
miRNA:   3'- guaaUGGCGCCa---GUCCcgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 122919 0.67 0.894275
Target:  5'- ---cGCCGUGaUUGGGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCcAGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 1925 0.67 0.894275
Target:  5'- ---cGCCGCGGcgCGGcGGCCACu---- -3'
miRNA:   3'- guaaUGGCGCCa-GUC-CCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 85244 0.67 0.913638
Target:  5'- ---cACCGCGG-CcGGGCCcagcACGUAGc -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 44047 0.66 0.91959
Target:  5'- ---aGgCGCGcGUCGGGGCCGCc---- -3'
miRNA:   3'- guaaUgGCGC-CAGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 47857 0.66 0.91959
Target:  5'- ---gGCCGCGGcCGcGGGCCGuCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGU-CCCGGU-GCauuu -5'
6353 3' -54 NC_001847.1 + 30721 0.66 0.940849
Target:  5'- --cUGCCGCGGcgCAGuGcGCCGCGc--- -3'
miRNA:   3'- guaAUGGCGCCa-GUC-C-CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 3016 0.66 0.940849
Target:  5'- ---cACCGC-GUCGcGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGU-CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 62735 0.66 0.940849
Target:  5'- ---gGCCGUGGccguccccgcgUCGGGGcCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCC-----------AGUCCC-GGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 22421 0.66 0.940849
Target:  5'- ----uCCGCGGgggCGGGGCC-CGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGuGCauuu -5'
6353 3' -54 NC_001847.1 + 44867 0.66 0.935916
Target:  5'- aCGUcGCCGCGccgcUCAaaGGCCGCGUGAAc -3'
miRNA:   3'- -GUAaUGGCGCc---AGUc-CCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 12380 0.66 0.935916
Target:  5'- ---gGCUGCGGccUCGGGG-CGCGUGu- -3'
miRNA:   3'- guaaUGGCGCC--AGUCCCgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 31431 0.66 0.930729
Target:  5'- ---gGCgGCGGcCGGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGgCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 3702 0.66 0.930729
Target:  5'- aCAcgGCCGCGGgccccgCGGccGCCGCGUAGc -3'
miRNA:   3'- -GUaaUGGCGCCa-----GUCc-CGGUGCAUUu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.