miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 59 0.66 0.925287
Target:  5'- gCAUUGCgGCGGgcgGGGGCgGgGUGGGg -3'
miRNA:   3'- -GUAAUGgCGCCag-UCCCGgUgCAUUU- -5'
6353 3' -54 NC_001847.1 + 1425 0.68 0.849089
Target:  5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 1635 0.67 0.900978
Target:  5'- ---cACCGCGGcgcgCAGGuaCACGUGc- -3'
miRNA:   3'- guaaUGGCGCCa---GUCCcgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 1925 0.67 0.894275
Target:  5'- ---cGCCGCGGcgCGGcGGCCACu---- -3'
miRNA:   3'- guaaUGGCGCCa-GUC-CCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 2785 0.68 0.840784
Target:  5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3'
miRNA:   3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 2906 0.73 0.58124
Target:  5'- --gUACCGCGcgagCGGGGCCACGg--- -3'
miRNA:   3'- guaAUGGCGCca--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 3016 0.66 0.940849
Target:  5'- ---cACCGC-GUCGcGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGU-CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 3097 0.69 0.805626
Target:  5'- ---gGCCGCGGcCGGcaGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC--CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 3702 0.66 0.930729
Target:  5'- aCAcgGCCGCGGgccccgCGGccGCCGCGUAGc -3'
miRNA:   3'- -GUaaUGGCGCCa-----GUCc-CGGUGCAUUu -5'
6353 3' -54 NC_001847.1 + 4911 0.67 0.907434
Target:  5'- ---cGCaCGCGGUCguuAGGGCCGCc---- -3'
miRNA:   3'- guaaUG-GCGCCAG---UCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 8491 0.68 0.872715
Target:  5'- ---gGCCGgGGgCGGGGCCccuuACGUGGg -3'
miRNA:   3'- guaaUGGCgCCaGUCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 10386 0.67 0.907434
Target:  5'- ---cGCuCGCGG-CGGGGCCGCu---- -3'
miRNA:   3'- guaaUG-GCGCCaGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 12380 0.66 0.935916
Target:  5'- ---gGCUGCGGccUCGGGG-CGCGUGu- -3'
miRNA:   3'- guaaUGGCGCC--AGUCCCgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 13109 0.66 0.930729
Target:  5'- -uUUGUCGCGGcCGGGGCgCGCGg--- -3'
miRNA:   3'- guAAUGGCGCCaGUCCCG-GUGCauuu -5'
6353 3' -54 NC_001847.1 + 13276 0.73 0.58124
Target:  5'- ---gGCCGCGucCAGGGCCACGUc-- -3'
miRNA:   3'- guaaUGGCGCcaGUCCCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 13713 0.67 0.907434
Target:  5'- ---gGCgGCGGUC-GGGCCGCu---- -3'
miRNA:   3'- guaaUGgCGCCAGuCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 14325 0.68 0.872715
Target:  5'- --cUGCuCGCGGU-GGGGCCggGCGUGGu -3'
miRNA:   3'- guaAUG-GCGCCAgUCCCGG--UGCAUUu -5'
6353 3' -54 NC_001847.1 + 15012 0.75 0.479545
Target:  5'- ---gGCCGCGGU-GGGGCCGCGcGAGc -3'
miRNA:   3'- guaaUGGCGCCAgUCCCGGUGCaUUU- -5'
6353 3' -54 NC_001847.1 + 15087 0.69 0.832278
Target:  5'- ---cGCCuGCGGcagCGGGGCCGCGc--- -3'
miRNA:   3'- guaaUGG-CGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 15148 0.75 0.48936
Target:  5'- --cUACUGCGcGUCGGGGCCGCuUGGAc -3'
miRNA:   3'- guaAUGGCGC-CAGUCCCGGUGcAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.