miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 126005 1.06 0.005214
Target:  5'- cCAUUACCGCGGUCAGGGCCACGUAAAa -3'
miRNA:   3'- -GUAAUGGCGCCAGUCCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 24220 0.78 0.322483
Target:  5'- ----cCCGCGGUuguaCGGGGCCACGUGGGu -3'
miRNA:   3'- guaauGGCGCCA----GUCCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 127033 0.78 0.322483
Target:  5'- ----cCCGCGGUuguaCGGGGCCACGUGGGu -3'
miRNA:   3'- guaauGGCGCCA----GUCCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 31316 0.76 0.4507
Target:  5'- ---cGCCGCGGgCGGcGGCCugGUGGAg -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGugCAUUU- -5'
6353 3' -54 NC_001847.1 + 134129 0.76 0.4507
Target:  5'- ---cGCCGCGGgCGGcGGCCugGUGGAg -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGugCAUUU- -5'
6353 3' -54 NC_001847.1 + 68225 0.75 0.48936
Target:  5'- ---gGCCGCGG-CGGGGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 15148 0.75 0.48936
Target:  5'- --cUACUGCGcGUCGGGGCCGCuUGGAc -3'
miRNA:   3'- guaAUGGCGC-CAGUCCCGGUGcAUUU- -5'
6353 3' -54 NC_001847.1 + 15012 0.75 0.479545
Target:  5'- ---gGCCGCGGU-GGGGCCGCGcGAGc -3'
miRNA:   3'- guaaUGGCGCCAgUCCCGGUGCaUUU- -5'
6353 3' -54 NC_001847.1 + 133724 0.75 0.460211
Target:  5'- --gUGCCugGCGGgcgCGGGGCCGCGUGc- -3'
miRNA:   3'- guaAUGG--CGCCa--GUCCCGGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 55314 0.75 0.483459
Target:  5'- ---cGCCGCGGUCGcccacuuccggcagcGGGCCACGg--- -3'
miRNA:   3'- guaaUGGCGCCAGU---------------CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 46692 0.74 0.539728
Target:  5'- ---cGCgCGCGGUCGGGGcCCGCGg--- -3'
miRNA:   3'- guaaUG-GCGCCAGUCCC-GGUGCauuu -5'
6353 3' -54 NC_001847.1 + 2906 0.73 0.58124
Target:  5'- --gUACCGCGcgagCGGGGCCACGg--- -3'
miRNA:   3'- guaAUGGCGCca--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 13276 0.73 0.58124
Target:  5'- ---gGCCGCGucCAGGGCCACGUc-- -3'
miRNA:   3'- guaaUGGCGCcaGUCCCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 105719 0.73 0.58124
Target:  5'- --gUACCGCGcgagCGGGGCCACGg--- -3'
miRNA:   3'- guaAUGGCGCca--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 83238 0.73 0.570785
Target:  5'- ---cGCCGCGGcCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 73028 0.73 0.58124
Target:  5'- ---gGCCGCGG-CAGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 102304 0.72 0.633939
Target:  5'- ---cGCCGCGGUCucGGcGGCCACGc--- -3'
miRNA:   3'- guaaUGGCGCCAG--UC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 16582 0.71 0.686588
Target:  5'- ---cAgCGgGGUCGGGGCgGCGUGGGg -3'
miRNA:   3'- guaaUgGCgCCAGUCCCGgUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 44910 0.71 0.686588
Target:  5'- ---aGCCGCGG-CGGcGGCCGCGa--- -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 98783 0.71 0.717675
Target:  5'- ---gGCCGCGG-CGGcGCCGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCaGUCcCGGUGCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.