miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 64175 0.67 0.880139
Target:  5'- --cUugCGCGGaCGGGGCgGCGg--- -3'
miRNA:   3'- guaAugGCGCCaGUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 94408 0.67 0.894275
Target:  5'- --gUACCGCGa-CGGGGCCAUGc--- -3'
miRNA:   3'- guaAUGGCGCcaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 22387 0.67 0.894275
Target:  5'- ----cCCGCGGggcCGGGGUCGCGa--- -3'
miRNA:   3'- guaauGGCGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 75517 0.67 0.907434
Target:  5'- ---gAgCGCGGUCGcGGGCgGCGUc-- -3'
miRNA:   3'- guaaUgGCGCCAGU-CCCGgUGCAuuu -5'
6353 3' -54 NC_001847.1 + 32210 0.67 0.907434
Target:  5'- ----cCCGCGGgCGGGGCCGgGg--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 13713 0.67 0.907434
Target:  5'- ---gGCgGCGGUC-GGGCCGCu---- -3'
miRNA:   3'- guaaUGgCGCCAGuCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 120032 0.67 0.900978
Target:  5'- ---cGCCGCcGUCAGGGCCGu----- -3'
miRNA:   3'- guaaUGGCGcCAGUCCCGGUgcauuu -5'
6353 3' -54 NC_001847.1 + 108647 0.67 0.900978
Target:  5'- --cUGCagaaGUGGcCGGGGCCGCGg--- -3'
miRNA:   3'- guaAUGg---CGCCaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 1635 0.67 0.900978
Target:  5'- ---cACCGCGGcgcgCAGGuaCACGUGc- -3'
miRNA:   3'- guaaUGGCGCCa---GUCCcgGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 122919 0.67 0.894275
Target:  5'- ---cGCCGUGaUUGGGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCcAGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 1925 0.67 0.894275
Target:  5'- ---cGCCGCGGcgCGGcGGCCACu---- -3'
miRNA:   3'- guaaUGGCGCCa-GUC-CCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 62689 0.67 0.894275
Target:  5'- ---cGCCGUGGUgCAGcGCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCCA-GUCcCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 51654 0.67 0.883042
Target:  5'- ---cGCCGCGGcgcugcgcccgcaaCAGGGCgGCGUAc- -3'
miRNA:   3'- guaaUGGCGCCa-------------GUCCCGgUGCAUuu -5'
6353 3' -54 NC_001847.1 + 85244 0.67 0.913638
Target:  5'- ---cACCGCGG-CcGGGCCcagcACGUAGc -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 115113 0.67 0.880139
Target:  5'- cCAggGCgGCGGccgCAGGGCCGCc---- -3'
miRNA:   3'- -GUaaUGgCGCCa--GUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 118895 0.67 0.887327
Target:  5'- aCGggGCCGgGGcCGGGGCCGgGg--- -3'
miRNA:   3'- -GUaaUGGCgCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 119734 0.67 0.887327
Target:  5'- gCcgUGCCGCGcucCAGGGCCGCccaGUGGc -3'
miRNA:   3'- -GuaAUGGCGCca-GUCCCGGUG---CAUUu -5'
6353 3' -54 NC_001847.1 + 105598 0.68 0.840784
Target:  5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3'
miRNA:   3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 38086 0.68 0.865061
Target:  5'- ---cGCCGCGGUCGGGGaaaGCa---- -3'
miRNA:   3'- guaaUGGCGCCAGUCCCgg-UGcauuu -5'
6353 3' -54 NC_001847.1 + 104238 0.68 0.849089
Target:  5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.