miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 2785 0.68 0.840784
Target:  5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3'
miRNA:   3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 101024 0.68 0.840784
Target:  5'- ---cACCGCGG-CAGGcGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCC-CGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 105598 0.68 0.840784
Target:  5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3'
miRNA:   3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 116892 0.68 0.849089
Target:  5'- ---cGCCGCGGUCGcGGCCAUc---- -3'
miRNA:   3'- guaaUGGCGCCAGUcCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 104238 0.68 0.849089
Target:  5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 1425 0.68 0.849089
Target:  5'- ---cACCGCGGUgCGcGGGCCcaggcGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCGG-----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 131664 0.68 0.857183
Target:  5'- --cUGCCGcCGGUCGGGgacGCCAUGg--- -3'
miRNA:   3'- guaAUGGC-GCCAGUCC---CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 28851 0.68 0.857183
Target:  5'- --cUGCCGcCGGUCGGGgacGCCAUGg--- -3'
miRNA:   3'- guaAUGGC-GCCAGUCC---CGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 127349 0.68 0.857183
Target:  5'- --cUGCCGCGGcaGGGGCgGCGg--- -3'
miRNA:   3'- guaAUGGCGCCagUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 38086 0.68 0.865061
Target:  5'- ---cGCCGCGGUCGGGGaaaGCa---- -3'
miRNA:   3'- guaaUGGCGCCAGUCCCgg-UGcauuu -5'
6353 3' -54 NC_001847.1 + 119216 0.68 0.865061
Target:  5'- ---cGCCGCGGccaccgCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 119156 0.68 0.865061
Target:  5'- ---cGCCGCGGccgccgCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 119096 0.68 0.865061
Target:  5'- ---cGCCGCGGccgccgCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCa-----GUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 32902 0.68 0.865061
Target:  5'- ---gGCCgGCGGggaagcCGGGGCCGCGg--- -3'
miRNA:   3'- guaaUGG-CGCCa-----GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 121400 0.68 0.865061
Target:  5'- ---gACCGgGGgCAGGaGCUGCGUGGAg -3'
miRNA:   3'- guaaUGGCgCCaGUCC-CGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 104399 0.68 0.870443
Target:  5'- ---gGCCGCGGUCuacgcccgcccagucGGCCACGUc-- -3'
miRNA:   3'- guaaUGGCGCCAGuc-------------CCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 100757 0.68 0.872715
Target:  5'- --cUGCCGCGG-CGGcGGCCGcCGUu-- -3'
miRNA:   3'- guaAUGGCGCCaGUC-CCGGU-GCAuuu -5'
6353 3' -54 NC_001847.1 + 48292 0.68 0.872715
Target:  5'- uCGggGCCGUGGcUCAuGGGCUugACGUAGg -3'
miRNA:   3'- -GUaaUGGCGCC-AGU-CCCGG--UGCAUUu -5'
6353 3' -54 NC_001847.1 + 14325 0.68 0.872715
Target:  5'- --cUGCuCGCGGU-GGGGCCggGCGUGGu -3'
miRNA:   3'- guaAUG-GCGCCAgUCCCGG--UGCAUUu -5'
6353 3' -54 NC_001847.1 + 8491 0.68 0.872715
Target:  5'- ---gGCCGgGGgCGGGGCCccuuACGUGGg -3'
miRNA:   3'- guaaUGGCgCCaGUCCCGG----UGCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.