miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 39113 0.7 0.76779
Target:  5'- ---cGCUGCGcGaCAGGGCUACGUAc- -3'
miRNA:   3'- guaaUGGCGC-CaGUCCCGGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 43225 0.7 0.74806
Target:  5'- cCGUUGCCcggugGCGGUgGGGGCgCGCGg--- -3'
miRNA:   3'- -GUAAUGG-----CGCCAgUCCCG-GUGCauuu -5'
6353 3' -54 NC_001847.1 + 44047 0.66 0.91959
Target:  5'- ---aGgCGCGcGUCGGGGCCGCc---- -3'
miRNA:   3'- guaaUgGCGC-CAGUCCCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 44687 0.69 0.796395
Target:  5'- ---aGCCGCGGau-GGGCCGCGcGGAc -3'
miRNA:   3'- guaaUGGCGCCaguCCCGGUGCaUUU- -5'
6353 3' -54 NC_001847.1 + 44867 0.66 0.935916
Target:  5'- aCGUcGCCGCGccgcUCAaaGGCCGCGUGAAc -3'
miRNA:   3'- -GUAaUGGCGCc---AGUc-CCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 44910 0.71 0.686588
Target:  5'- ---aGCCGCGG-CGGcGGCCGCGa--- -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 46334 0.69 0.823577
Target:  5'- ---gGCCGCccgCGGGGCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGccaGUCCCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 46692 0.74 0.539728
Target:  5'- ---cGCgCGCGGUCGGGGcCCGCGg--- -3'
miRNA:   3'- guaaUG-GCGCCAGUCCC-GGUGCauuu -5'
6353 3' -54 NC_001847.1 + 47857 0.66 0.91959
Target:  5'- ---gGCCGCGGcCGcGGGCCGuCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGU-CCCGGU-GCauuu -5'
6353 3' -54 NC_001847.1 + 48292 0.68 0.872715
Target:  5'- uCGggGCCGUGGcUCAuGGGCUugACGUAGg -3'
miRNA:   3'- -GUaaUGGCGCC-AGU-CCCGG--UGCAUUu -5'
6353 3' -54 NC_001847.1 + 50772 0.7 0.74806
Target:  5'- --cUGCCGCGGUCcGcGGCCGCu---- -3'
miRNA:   3'- guaAUGGCGCCAGuC-CCGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 51654 0.67 0.883042
Target:  5'- ---cGCCGCGGcgcugcgcccgcaaCAGGGCgGCGUAc- -3'
miRNA:   3'- guaaUGGCGCCa-------------GUCCCGgUGCAUuu -5'
6353 3' -54 NC_001847.1 + 55314 0.75 0.483459
Target:  5'- ---cGCCGCGGUCGcccacuuccggcagcGGGCCACGg--- -3'
miRNA:   3'- guaaUGGCGCCAGU---------------CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 56542 0.71 0.695972
Target:  5'- --gUGCCGCGGcggCAGcuccagggagcgcGGCCGCGUGAu -3'
miRNA:   3'- guaAUGGCGCCa--GUC-------------CCGGUGCAUUu -5'
6353 3' -54 NC_001847.1 + 59179 0.71 0.717675
Target:  5'- ---gGCgGCGGUCgagGGGGCCGuCGUAGc -3'
miRNA:   3'- guaaUGgCGCCAG---UCCCGGU-GCAUUu -5'
6353 3' -54 NC_001847.1 + 62689 0.67 0.894275
Target:  5'- ---cGCCGUGGUgCAGcGCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCCA-GUCcCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 62735 0.66 0.940849
Target:  5'- ---gGCCGUGGccguccccgcgUCGGGGcCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCC-----------AGUCCC-GGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 64175 0.67 0.880139
Target:  5'- --cUugCGCGGaCGGGGCgGCGg--- -3'
miRNA:   3'- guaAugGCGCCaGUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 65050 0.67 0.894275
Target:  5'- -uUUGCCGCGGUguGG-CC-CGUGu- -3'
miRNA:   3'- guAAUGGCGCCAguCCcGGuGCAUuu -5'
6353 3' -54 NC_001847.1 + 68225 0.75 0.48936
Target:  5'- ---gGCCGCGG-CGGGGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGUGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.