miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 100757 0.68 0.872715
Target:  5'- --cUGCCGCGG-CGGcGGCCGcCGUu-- -3'
miRNA:   3'- guaAUGGCGCCaGUC-CCGGU-GCAuuu -5'
6353 3' -54 NC_001847.1 + 100643 0.71 0.707378
Target:  5'- ---gGCUGCGGcgcCAGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGCCa--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 99694 0.66 0.935916
Target:  5'- ---gGCgCGCGG-CGcGGGCCGcCGUAAAg -3'
miRNA:   3'- guaaUG-GCGCCaGU-CCCGGU-GCAUUU- -5'
6353 3' -54 NC_001847.1 + 98783 0.71 0.717675
Target:  5'- ---gGCCGCGG-CGGcGCCGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCaGUCcCGGUGCAUUu -5'
6353 3' -54 NC_001847.1 + 98739 0.67 0.900978
Target:  5'- cCGggGCCGgGGcCGGGGCCGgGg--- -3'
miRNA:   3'- -GUaaUGGCgCCaGUCCCGGUgCauuu -5'
6353 3' -54 NC_001847.1 + 98248 0.69 0.823577
Target:  5'- ---cGCCGUGGcggCGGGGCaGCGUAGu -3'
miRNA:   3'- guaaUGGCGCCa--GUCCCGgUGCAUUu -5'
6353 3' -54 NC_001847.1 + 97463 0.69 0.81469
Target:  5'- ---aGCCGCGc-CAGGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGCcaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 94408 0.67 0.894275
Target:  5'- --gUACCGCGa-CGGGGCCAUGc--- -3'
miRNA:   3'- guaAUGGCGCcaGUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 89527 0.71 0.731959
Target:  5'- --cUGCCGCcgggcggcagcgacgGGUCAgauuggcccgcGGGCCGCGUGAGc -3'
miRNA:   3'- guaAUGGCG---------------CCAGU-----------CCCGGUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 85244 0.67 0.913638
Target:  5'- ---cACCGCGG-CcGGGCCcagcACGUAGc -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGG----UGCAUUu -5'
6353 3' -54 NC_001847.1 + 83238 0.73 0.570785
Target:  5'- ---cGCCGCGGcCGGGGCgGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGgUGCauuu -5'
6353 3' -54 NC_001847.1 + 81038 0.67 0.880139
Target:  5'- ---cGCCGCGGacugCGGGGgCgACGUGGg -3'
miRNA:   3'- guaaUGGCGCCa---GUCCC-GgUGCAUUu -5'
6353 3' -54 NC_001847.1 + 80470 0.66 0.935916
Target:  5'- ---cGCCGCcGUC-GGGCCGCGc--- -3'
miRNA:   3'- guaaUGGCGcCAGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 76411 0.66 0.935916
Target:  5'- ---gGCCGCGG-CGGGGgcaccCCGCGgcGGg -3'
miRNA:   3'- guaaUGGCGCCaGUCCC-----GGUGCauUU- -5'
6353 3' -54 NC_001847.1 + 75517 0.67 0.907434
Target:  5'- ---gAgCGCGGUCGcGGGCgGCGUc-- -3'
miRNA:   3'- guaaUgGCGCCAGU-CCCGgUGCAuuu -5'
6353 3' -54 NC_001847.1 + 73861 0.66 0.930729
Target:  5'- ---cGCCGCGGUgCGcGGGgCGCGUc-- -3'
miRNA:   3'- guaaUGGCGCCA-GU-CCCgGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 73028 0.73 0.58124
Target:  5'- ---gGCCGCGG-CAGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 70689 0.67 0.907434
Target:  5'- ---gACCGCGGgccCGGGGCUggcCGUGGc -3'
miRNA:   3'- guaaUGGCGCCa--GUCCCGGu--GCAUUu -5'
6353 3' -54 NC_001847.1 + 68464 0.66 0.935916
Target:  5'- ----cCCGCGGcCGGGGCCcCGc--- -3'
miRNA:   3'- guaauGGCGCCaGUCCCGGuGCauuu -5'
6353 3' -54 NC_001847.1 + 68225 0.75 0.48936
Target:  5'- ---gGCCGCGG-CGGGGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGUGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.