miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6353 3' -54 NC_001847.1 + 101024 0.68 0.840784
Target:  5'- ---cACCGCGG-CAGGcGCCGCa---- -3'
miRNA:   3'- guaaUGGCGCCaGUCC-CGGUGcauuu -5'
6353 3' -54 NC_001847.1 + 2785 0.68 0.840784
Target:  5'- ---cGCCgGCGGccucCAGGGCCGCGa--- -3'
miRNA:   3'- guaaUGG-CGCCa---GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 56542 0.71 0.695972
Target:  5'- --gUGCCGCGGcggCAGcuccagggagcgcGGCCGCGUGAu -3'
miRNA:   3'- guaAUGGCGCCa--GUC-------------CCGGUGCAUUu -5'
6353 3' -54 NC_001847.1 + 16582 0.71 0.686588
Target:  5'- ---cAgCGgGGUCGGGGCgGCGUGGGg -3'
miRNA:   3'- guaaUgGCgCCAGUCCCGgUGCAUUU- -5'
6353 3' -54 NC_001847.1 + 102304 0.72 0.633939
Target:  5'- ---cGCCGCGGUCucGGcGGCCACGc--- -3'
miRNA:   3'- guaaUGGCGCCAG--UC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 73028 0.73 0.58124
Target:  5'- ---gGCCGCGG-CAGcGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 13276 0.73 0.58124
Target:  5'- ---gGCCGCGucCAGGGCCACGUc-- -3'
miRNA:   3'- guaaUGGCGCcaGUCCCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 2906 0.73 0.58124
Target:  5'- --gUACCGCGcgagCGGGGCCACGg--- -3'
miRNA:   3'- guaAUGGCGCca--GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 46692 0.74 0.539728
Target:  5'- ---cGCgCGCGGUCGGGGcCCGCGg--- -3'
miRNA:   3'- guaaUG-GCGCCAGUCCC-GGUGCauuu -5'
6353 3' -54 NC_001847.1 + 55314 0.75 0.483459
Target:  5'- ---cGCCGCGGUCGcccacuuccggcagcGGGCCACGg--- -3'
miRNA:   3'- guaaUGGCGCCAGU---------------CCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 44910 0.71 0.686588
Target:  5'- ---aGCCGCGG-CGGcGGCCGCGa--- -3'
miRNA:   3'- guaaUGGCGCCaGUC-CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 98783 0.71 0.717675
Target:  5'- ---gGCCGCGG-CGGcGCCGCGUGGc -3'
miRNA:   3'- guaaUGGCGCCaGUCcCGGUGCAUUu -5'
6353 3' -54 NC_001847.1 + 98248 0.69 0.823577
Target:  5'- ---cGCCGUGGcggCGGGGCaGCGUAGu -3'
miRNA:   3'- guaaUGGCGCCa--GUCCCGgUGCAUUu -5'
6353 3' -54 NC_001847.1 + 46334 0.69 0.823577
Target:  5'- ---gGCCGCccgCGGGGCCGCGUc-- -3'
miRNA:   3'- guaaUGGCGccaGUCCCGGUGCAuuu -5'
6353 3' -54 NC_001847.1 + 38977 0.69 0.81469
Target:  5'- ---gGCCGCGG-CGGGGCUuaGUAGAc -3'
miRNA:   3'- guaaUGGCGCCaGUCCCGGugCAUUU- -5'
6353 3' -54 NC_001847.1 + 3097 0.69 0.805626
Target:  5'- ---gGCCGCGGcCGGcaGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGUC--CCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 102843 0.7 0.76779
Target:  5'- cCGUU-CCGCGGcggcgucgCGGGGCCGCGc--- -3'
miRNA:   3'- -GUAAuGGCGCCa-------GUCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 29224 0.7 0.76779
Target:  5'- ---gGCCGCGG-C-GGGCCGCGg--- -3'
miRNA:   3'- guaaUGGCGCCaGuCCCGGUGCauuu -5'
6353 3' -54 NC_001847.1 + 39113 0.7 0.76779
Target:  5'- ---cGCUGCGcGaCAGGGCUACGUAc- -3'
miRNA:   3'- guaaUGGCGC-CaGUCCCGGUGCAUuu -5'
6353 3' -54 NC_001847.1 + 50772 0.7 0.74806
Target:  5'- --cUGCCGCGGUCcGcGGCCGCu---- -3'
miRNA:   3'- guaAUGGCGCCAGuC-CCGGUGcauuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.