miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 54797 0.67 0.944062
Target:  5'- cUGCaCGGGuACUGCGAGCUg-----GCg -3'
miRNA:   3'- aGCG-GCCC-UGGCGCUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 54813 0.66 0.973484
Target:  5'- gCGCUGGcGAgCGCGGGCacgGUGguggACa -3'
miRNA:   3'- aGCGGCC-CUgGCGCUCGaaaUAUa---UG- -5'
6354 3' -52.4 NC_001847.1 + 56603 0.66 0.97615
Target:  5'- gCGCCGGGACuCGCGucuuccGGCg-------- -3'
miRNA:   3'- aGCGGCCCUG-GCGC------UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 57302 0.75 0.608836
Target:  5'- cUGCCGGG-CCGCGAGCUc------- -3'
miRNA:   3'- aGCGGCCCuGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 57689 0.66 0.97615
Target:  5'- gUGCUGGGcGCCGCGGGUg-------- -3'
miRNA:   3'- aGCGGCCC-UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 57756 0.66 0.974575
Target:  5'- cCGCCGGG-CCaCGAGCgagagcggGCg -3'
miRNA:   3'- aGCGGCCCuGGcGCUCGaaauaua-UG- -5'
6354 3' -52.4 NC_001847.1 + 58584 0.68 0.928995
Target:  5'- -gGCCGGG-CCGCcGGCUgcGUGgGCa -3'
miRNA:   3'- agCGGCCCuGGCGcUCGAaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 59509 0.68 0.917674
Target:  5'- gCGCCGaGGCCGCaccGGCUUg--GUGCg -3'
miRNA:   3'- aGCGGCcCUGGCGc--UCGAAauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 62486 0.66 0.973484
Target:  5'- gUCGCCGGcgggcGGCCGCGGGgUg-----GCg -3'
miRNA:   3'- -AGCGGCC-----CUGGCGCUCgAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 62564 0.66 0.973206
Target:  5'- cCGCCGcGGCCGCGguugcucGGCUUUGcguuUGCc -3'
miRNA:   3'- aGCGGCcCUGGCGC-------UCGAAAUau--AUG- -5'
6354 3' -52.4 NC_001847.1 + 62891 0.69 0.891992
Target:  5'- uUCGUCGGGugCaGCGGGUggcgcggGUGCu -3'
miRNA:   3'- -AGCGGCCCugG-CGCUCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 63346 0.67 0.956869
Target:  5'- cUCGCCGcccaGGGgCGCGuGCggcacUGUGUACu -3'
miRNA:   3'- -AGCGGC----CCUgGCGCuCGaa---AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 65732 0.67 0.960651
Target:  5'- cCGCCGGGGCgGCgcucgaGAGCgugGUGgcccGCg -3'
miRNA:   3'- aGCGGCCCUGgCG------CUCGaaaUAUa---UG- -5'
6354 3' -52.4 NC_001847.1 + 65964 0.66 0.97615
Target:  5'- cUCGCgCGGGACgugaCGCGcaagugcacGGCU--AUGUGCa -3'
miRNA:   3'- -AGCG-GCCCUG----GCGC---------UCGAaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 66067 0.76 0.566805
Target:  5'- gCGCCGGGGgcgaCGCGGGCUUUGagcUGCu -3'
miRNA:   3'- aGCGGCCCUg---GCGCUCGAAAUau-AUG- -5'
6354 3' -52.4 NC_001847.1 + 67094 0.71 0.793127
Target:  5'- gCGCCGcGaGGCCGCcgugucGAGCUUUGUgcagGUGCg -3'
miRNA:   3'- aGCGGC-C-CUGGCG------CUCGAAAUA----UAUG- -5'
6354 3' -52.4 NC_001847.1 + 67326 0.7 0.862421
Target:  5'- cCGCgCGGacGCCGCG-GCUUUGUcgGCg -3'
miRNA:   3'- aGCG-GCCc-UGGCGCuCGAAAUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 68469 0.66 0.973206
Target:  5'- -gGCCGGGGCCccgccgcGCGGGCg-------- -3'
miRNA:   3'- agCGGCCCUGG-------CGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 68878 0.68 0.928995
Target:  5'- cCGcCCGGGagucGCCGCGAGCa-------- -3'
miRNA:   3'- aGC-GGCCC----UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 68932 0.67 0.952846
Target:  5'- -gGCgCGGcGGCCGCGGGCUg------- -3'
miRNA:   3'- agCG-GCC-CUGGCGCUCGAaauauaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.