miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 41647 0.71 0.793127
Target:  5'- gCGCCGGGggGCCGCGAGaa----GUACc -3'
miRNA:   3'- aGCGGCCC--UGGCGCUCgaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 42117 0.68 0.941231
Target:  5'- gCGCCgGGGGCCGCuucccgcguuggcgaGAGCUggcccgGCg -3'
miRNA:   3'- aGCGG-CCCUGGCG---------------CUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 43286 0.71 0.820527
Target:  5'- aCGCCGcGcGugCGCGGGCUgcgGaGUACg -3'
miRNA:   3'- aGCGGC-C-CugGCGCUCGAaa-UaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 44528 0.68 0.928995
Target:  5'- cCGCCGu--CCGCGAGCUcgcgGUGCc -3'
miRNA:   3'- aGCGGCccuGGCGCUCGAaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 44934 0.66 0.970608
Target:  5'- gUCGCUGGGGCgCuCGGGCUgggcg-ACg -3'
miRNA:   3'- -AGCGGCCCUG-GcGCUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 46217 0.67 0.952846
Target:  5'- cCGCCGGGccgGCCGCGGGg--------- -3'
miRNA:   3'- aGCGGCCC---UGGCGCUCgaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 46880 0.68 0.923462
Target:  5'- -aGCCGGGACgcgUGCGAGCg-------- -3'
miRNA:   3'- agCGGCCCUG---GCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 47399 0.7 0.877675
Target:  5'- aUCGCCGGcuccgugaGGCCGUGGGCggcGUcUGCg -3'
miRNA:   3'- -AGCGGCC--------CUGGCGCUCGaaaUAuAUG- -5'
6354 3' -52.4 NC_001847.1 + 47409 0.68 0.923462
Target:  5'- aCGUCGuagacGGCCGUGAGCUUcuccgagAUGUACg -3'
miRNA:   3'- aGCGGCc----CUGGCGCUCGAAa------UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 47857 0.67 0.944062
Target:  5'- -gGCCGcGGCCGCGGGCc--GUcgGCg -3'
miRNA:   3'- agCGGCcCUGGCGCUCGaaaUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 48289 0.68 0.938803
Target:  5'- aUGUCGGGGCCGUggcucauGGGCUUgacGUAgGCg -3'
miRNA:   3'- aGCGGCCCUGGCG-------CUCGAAa--UAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 49214 0.92 0.069906
Target:  5'- gCGCCGGGGcCCGCGGGCUUcGUGUACg -3'
miRNA:   3'- aGCGGCCCU-GGCGCUCGAAaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 52284 0.7 0.859262
Target:  5'- gCGCCGGcuuugugugcgcGACCGCGGGCgcgggcgGCg -3'
miRNA:   3'- aGCGGCC------------CUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 53362 0.69 0.898787
Target:  5'- cUGCUGGcGGCCGCGGGCa-------- -3'
miRNA:   3'- aGCGGCC-CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 53595 0.69 0.905334
Target:  5'- cUGCgCGGGGCCGgCGAGCUc------- -3'
miRNA:   3'- aGCG-GCCCUGGC-GCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 53714 0.67 0.952846
Target:  5'- cCGCCGGcGGCuCGCgGGGCgg-AUcgGCg -3'
miRNA:   3'- aGCGGCC-CUG-GCG-CUCGaaaUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 53882 0.66 0.967515
Target:  5'- cCGCgGGGGCgGCGGGCc-------- -3'
miRNA:   3'- aGCGgCCCUGgCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 54386 0.67 0.951169
Target:  5'- gCGgCGGGcgGCCGCGGGCgaggcggGCg -3'
miRNA:   3'- aGCgGCCC--UGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 54497 0.73 0.693219
Target:  5'- gCGCCGGGucucCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGCCCu---GGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 54502 0.69 0.898787
Target:  5'- gCGCCGGGGCCG-GGGUggggg--GCg -3'
miRNA:   3'- aGCGGCCCUGGCgCUCGaaauauaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.