miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 15780 0.67 0.956869
Target:  5'- uUCGCCGGcGgcaagcGCCGCGcggcgggaGGCggcgGUGUACg -3'
miRNA:   3'- -AGCGGCC-C------UGGCGC--------UCGaaa-UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 54386 0.67 0.951169
Target:  5'- gCGgCGGGcgGCCGCGGGCgaggcggGCg -3'
miRNA:   3'- aGCgGCCC--UGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 65732 0.67 0.960651
Target:  5'- cCGCCGGGGCgGCgcucgaGAGCgugGUGgcccGCg -3'
miRNA:   3'- aGCGGCCCUGgCG------CUCGaaaUAUa---UG- -5'
6354 3' -52.4 NC_001847.1 + 3486 0.67 0.951592
Target:  5'- gCGCCGaGAgcucgcacaugagcCgCGCGAGCUUcGUGUACg -3'
miRNA:   3'- aGCGGCcCU--------------G-GCGCUCGAAaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 32133 0.67 0.944062
Target:  5'- gCGCCGGGGgCGgGGGCgggg---GCg -3'
miRNA:   3'- aGCGGCCCUgGCgCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 7387 0.67 0.948578
Target:  5'- cUGCCGGGcaaGCCGCcGcAGCUgc-UGUACc -3'
miRNA:   3'- aGCGGCCC---UGGCG-C-UCGAaauAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 22394 0.67 0.952846
Target:  5'- gCGCCcGGGCCGCG-GCgagc-GUGCu -3'
miRNA:   3'- aGCGGcCCUGGCGCuCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 53714 0.67 0.952846
Target:  5'- cCGCCGGcGGCuCGCgGGGCgg-AUcgGCg -3'
miRNA:   3'- aGCGGCC-CUG-GCG-CUCGaaaUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 63346 0.67 0.956869
Target:  5'- cUCGCCGcccaGGGgCGCGuGCggcacUGUGUACu -3'
miRNA:   3'- -AGCGGC----CCUgGCGCuCGaa---AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 113963 0.67 0.960284
Target:  5'- cCGCCGGGcgcgucGCCGCagaagcgcuccagGAGC---GUAUACa -3'
miRNA:   3'- aGCGGCCC------UGGCG-------------CUCGaaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 2295 0.67 0.960651
Target:  5'- gCGgCGGGGCCGcCGGGCggcAUGgGCc -3'
miRNA:   3'- aGCgGCCCUGGC-GCUCGaaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 54797 0.67 0.944062
Target:  5'- cUGCaCGGGuACUGCGAGCUg-----GCg -3'
miRNA:   3'- aGCG-GCCC-UGGCGCUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 32914 0.67 0.948578
Target:  5'- -aGCCGGGGCCGCGGa---------- -3'
miRNA:   3'- agCGGCCCUGGCGCUcgaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 132407 0.67 0.944062
Target:  5'- gCGCCGGG-CCGgGGGCcg-GUGg-- -3'
miRNA:   3'- aGCGGCCCuGGCgCUCGaaaUAUaug -5'
6354 3' -52.4 NC_001847.1 + 14037 0.67 0.948578
Target:  5'- gCGCUGGucGGCCGCGAGCc-------- -3'
miRNA:   3'- aGCGGCC--CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 81037 0.67 0.944062
Target:  5'- cCGCCGcGGACUGCGggGGCgacGUGgGCg -3'
miRNA:   3'- aGCGGC-CCUGGCGC--UCGaaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 110200 0.67 0.948578
Target:  5'- cUGCCGGGcaaGCCGCcGcAGCUgc-UGUACc -3'
miRNA:   3'- aGCGGCCC---UGGCG-C-UCGAaauAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 41624 0.67 0.948578
Target:  5'- cCGCCGugauGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGCc---CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 93058 0.67 0.948578
Target:  5'- gUGCCGGcACCGCGAGgccg--AUGCg -3'
miRNA:   3'- aGCGGCCcUGGCGCUCgaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 98749 0.67 0.948578
Target:  5'- -gGCCGGGGCCG-GGGCa-------- -3'
miRNA:   3'- agCGGCCCUGGCgCUCGaaauauaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.