miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 79540 0.66 0.978615
Target:  5'- cCGUCGGGGCCGgGggGGCUggg---GCu -3'
miRNA:   3'- aGCGGCCCUGGCgC--UCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 104829 0.66 0.978615
Target:  5'- cCGCCGGGGggGCGGGCg-------- -3'
miRNA:   3'- aGCGGCCCUggCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 44934 0.66 0.970608
Target:  5'- gUCGCUGGGGCgCuCGGGCUgggcg-ACg -3'
miRNA:   3'- -AGCGGCCCUG-GcGCUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 21914 0.66 0.970608
Target:  5'- -gGCCGaGGCCGCGGGCgag----GCg -3'
miRNA:   3'- agCGGCcCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 65964 0.66 0.97615
Target:  5'- cUCGCgCGGGACgugaCGCGcaagugcacGGCU--AUGUGCa -3'
miRNA:   3'- -AGCG-GCCCUG----GCGC---------UCGAaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 117472 0.66 0.97615
Target:  5'- gUGCCcggcGGACCGCGAGCcgccg--ACg -3'
miRNA:   3'- aGCGGc---CCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 99088 0.66 0.973484
Target:  5'- gUGCUGGGGCCugucuGCGAGCa-------- -3'
miRNA:   3'- aGCGGCCCUGG-----CGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 57689 0.66 0.97615
Target:  5'- gUGCUGGGcGCCGCGGGUg-------- -3'
miRNA:   3'- aGCGGCCC-UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 75769 0.66 0.970007
Target:  5'- cCGCgCGGGugaacacgGCCGCGGGCUcggcgcgGCg -3'
miRNA:   3'- aGCG-GCCC--------UGGCGCUCGAaauaua-UG- -5'
6354 3' -52.4 NC_001847.1 + 96630 0.66 0.964198
Target:  5'- gCGCgGGGGCCGgCGGGUacgcgucGUGCg -3'
miRNA:   3'- aGCGgCCCUGGC-GCUCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 75834 0.66 0.964198
Target:  5'- cCGCCGGcGCCGCGccuGGCacccuggGUACg -3'
miRNA:   3'- aGCGGCCcUGGCGC---UCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 118899 0.66 0.978615
Target:  5'- -gGCCGGGGCCG-GGGCc-------- -3'
miRNA:   3'- agCGGCCCUGGCgCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 26519 0.66 0.970007
Target:  5'- -gGCgCGGGGCCGgGGGCguucggccAUGCu -3'
miRNA:   3'- agCG-GCCCUGGCgCUCGaaaua---UAUG- -5'
6354 3' -52.4 NC_001847.1 + 33756 0.66 0.967515
Target:  5'- aUUGCCGGcGgcGCCGCGGGCa-------- -3'
miRNA:   3'- -AGCGGCC-C--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 100853 0.66 0.967515
Target:  5'- cUCGCUGacGGCCGCGAGCgcg----GCg -3'
miRNA:   3'- -AGCGGCc-CUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 1965 0.66 0.96454
Target:  5'- cUCGCCGGGcggcGCCGCcAGCgccuccccgGCa -3'
miRNA:   3'- -AGCGGCCC----UGGCGcUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 65732 0.67 0.960651
Target:  5'- cCGCCGGGGCgGCgcucgaGAGCgugGUGgcccGCg -3'
miRNA:   3'- aGCGGCCCUGgCG------CUCGaaaUAUa---UG- -5'
6354 3' -52.4 NC_001847.1 + 105108 0.67 0.960651
Target:  5'- gCGgCGGGGCCGcCGGGCggcAUGgGCc -3'
miRNA:   3'- aGCgGCCCUGGC-GCUCGaaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 79266 0.67 0.956869
Target:  5'- gCGUCGGG-CCGCGcGGCgaagcgGUGCc -3'
miRNA:   3'- aGCGGCCCuGGCGC-UCGaaaua-UAUG- -5'
6354 3' -52.4 NC_001847.1 + 7387 0.67 0.948578
Target:  5'- cUGCCGGGcaaGCCGCcGcAGCUgc-UGUACc -3'
miRNA:   3'- aGCGGCCC---UGGCG-C-UCGAaauAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.