miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 120358 0.69 0.911631
Target:  5'- gCGCuacaaCGGGACCGuCGAGCUgc---UGCg -3'
miRNA:   3'- aGCG-----GCCCUGGC-GCUCGAaauauAUG- -5'
6354 3' -52.4 NC_001847.1 + 75141 0.7 0.837893
Target:  5'- cCGCCGGGGCCgGCGGuGCUcucggUUAgguuuUGCa -3'
miRNA:   3'- aGCGGCCCUGG-CGCU-CGA-----AAUau---AUG- -5'
6354 3' -52.4 NC_001847.1 + 66067 0.76 0.566805
Target:  5'- gCGCCGGGGgcgaCGCGGGCUUUGagcUGCu -3'
miRNA:   3'- aGCGGCCCUg---GCGCUCGAAAUau-AUG- -5'
6354 3' -52.4 NC_001847.1 + 76403 0.69 0.911631
Target:  5'- gCGCCgGGGGCCGCG-GCgggg---GCa -3'
miRNA:   3'- aGCGG-CCCUGGCGCuCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 105795 0.79 0.410143
Target:  5'- cCGCCGGGGCCGCGcGCUggAgccGCg -3'
miRNA:   3'- aGCGGCCCUGGCGCuCGAaaUauaUG- -5'
6354 3' -52.4 NC_001847.1 + 41624 0.67 0.948578
Target:  5'- cCGCCGugauGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGCc---CUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 83951 0.75 0.598281
Target:  5'- gCGCgCGGGGCCGgGGGCggagacGUGUACc -3'
miRNA:   3'- aGCG-GCCCUGGCgCUCGaaa---UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 132407 0.67 0.944062
Target:  5'- gCGCCGGG-CCGgGGGCcg-GUGg-- -3'
miRNA:   3'- aGCGGCCCuGGCgCUCGaaaUAUaug -5'
6354 3' -52.4 NC_001847.1 + 82379 0.68 0.939294
Target:  5'- gCGCCGcGuGACCuGCGGGCUggucAUcgGCa -3'
miRNA:   3'- aGCGGC-C-CUGG-CGCUCGAaa--UAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 102659 0.68 0.934272
Target:  5'- gCGCCGGGagcgGCCGCGAGg--------- -3'
miRNA:   3'- aGCGGCCC----UGGCGCUCgaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 68878 0.68 0.928995
Target:  5'- cCGcCCGGGagucGCCGCGAGCa-------- -3'
miRNA:   3'- aGC-GGCCC----UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 47409 0.68 0.923462
Target:  5'- aCGUCGuagacGGCCGUGAGCUUcuccgagAUGUACg -3'
miRNA:   3'- aGCGGCc----CUGGCGCUCGAAa------UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 59509 0.68 0.917674
Target:  5'- gCGCCGaGGCCGCaccGGCUUg--GUGCg -3'
miRNA:   3'- aGCGGCcCUGGCGc--UCGAAauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 27216 0.69 0.911631
Target:  5'- gCGCCGGGGCgCuCGAGCUgcggGUcGCa -3'
miRNA:   3'- aGCGGCCCUG-GcGCUCGAaauaUA-UG- -5'
6354 3' -52.4 NC_001847.1 + 54502 0.69 0.898787
Target:  5'- gCGCCGGGGCCG-GGGUggggg--GCg -3'
miRNA:   3'- aGCGGCCCUGGCgCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 101504 0.69 0.884953
Target:  5'- gCGCCGGcugcACCGCGGGUgUUUGUcgACc -3'
miRNA:   3'- aGCGGCCc---UGGCGCUCG-AAAUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 97215 0.7 0.867864
Target:  5'- cUCGCCGGGG-CGCGAGUcgggaccaagcgugUUgucgcggugUAUAUACa -3'
miRNA:   3'- -AGCGGCCCUgGCGCUCG--------------AA---------AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 132451 0.71 0.811565
Target:  5'- -gGCCGGGgcGCCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCC--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 13117 0.72 0.764331
Target:  5'- -gGCCGGGGCgCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCCUG-GCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 3869 0.75 0.629994
Target:  5'- gCGCCGGGGCUGCGcAGCUc------- -3'
miRNA:   3'- aGCGGCCCUGGCGC-UCGAaauauaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.