miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 13388 0.66 0.97615
Target:  5'- aCGuCCGGGcgcGCCGCGGGCc-------- -3'
miRNA:   3'- aGC-GGCCC---UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 56603 0.66 0.97615
Target:  5'- gCGCCGGGACuCGCGucuuccGGCg-------- -3'
miRNA:   3'- aGCGGCCCUG-GCGC------UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 39012 0.66 0.97615
Target:  5'- cUCGUCGcGGAgUGCG-GCUaaUAUAUGCu -3'
miRNA:   3'- -AGCGGC-CCUgGCGCuCGAa-AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 79540 0.66 0.978615
Target:  5'- cCGUCGGGGCCGgGggGGCUggg---GCu -3'
miRNA:   3'- aGCGGCCCUGGCgC--UCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 104829 0.66 0.978615
Target:  5'- cCGCCGGGGggGCGGGCg-------- -3'
miRNA:   3'- aGCGGCCCUggCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 44934 0.66 0.970608
Target:  5'- gUCGCUGGGGCgCuCGGGCUgggcg-ACg -3'
miRNA:   3'- -AGCGGCCCUG-GcGCUCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 21914 0.66 0.970608
Target:  5'- -gGCCGaGGCCGCGGGCgag----GCg -3'
miRNA:   3'- agCGGCcCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 22394 0.67 0.952846
Target:  5'- gCGCCcGGGCCGCG-GCgagc-GUGCu -3'
miRNA:   3'- aGCGGcCCUGGCGCuCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 68932 0.67 0.952846
Target:  5'- -gGCgCGGcGGCCGCGGGCUg------- -3'
miRNA:   3'- agCG-GCC-CUGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 53714 0.67 0.952846
Target:  5'- cCGCCGGcGGCuCGCgGGGCgg-AUcgGCg -3'
miRNA:   3'- aGCGGCC-CUG-GCG-CUCGaaaUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 63346 0.67 0.956869
Target:  5'- cUCGCCGcccaGGGgCGCGuGCggcacUGUGUACu -3'
miRNA:   3'- -AGCGGC----CCUgGCGCuCGaa---AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 113963 0.67 0.960284
Target:  5'- cCGCCGGGcgcgucGCCGCagaagcgcuccagGAGC---GUAUACa -3'
miRNA:   3'- aGCGGCCC------UGGCG-------------CUCGaaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 2295 0.67 0.960651
Target:  5'- gCGgCGGGGCCGcCGGGCggcAUGgGCc -3'
miRNA:   3'- aGCgGCCCUGGC-GCUCGaaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 2983 0.67 0.960651
Target:  5'- cCGCCGGGGCCG-GcGCUggAgccGCg -3'
miRNA:   3'- aGCGGCCCUGGCgCuCGAaaUauaUG- -5'
6354 3' -52.4 NC_001847.1 + 96630 0.66 0.964198
Target:  5'- gCGCgGGGGCCGgCGGGUacgcgucGUGCg -3'
miRNA:   3'- aGCGgCCCUGGC-GCUCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 75834 0.66 0.964198
Target:  5'- cCGCCGGcGCCGCGccuGGCacccuggGUACg -3'
miRNA:   3'- aGCGGCCcUGGCGC---UCGaaaua--UAUG- -5'
6354 3' -52.4 NC_001847.1 + 1965 0.66 0.96454
Target:  5'- cUCGCCGGGcggcGCCGCcAGCgccuccccgGCa -3'
miRNA:   3'- -AGCGGCCC----UGGCGcUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 100853 0.66 0.967515
Target:  5'- cUCGCUGacGGCCGCGAGCgcg----GCg -3'
miRNA:   3'- -AGCGGCc-CUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 33756 0.66 0.967515
Target:  5'- aUUGCCGGcGgcGCCGCGGGCa-------- -3'
miRNA:   3'- -AGCGGCC-C--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 26519 0.66 0.970007
Target:  5'- -gGCgCGGGGCCGgGGGCguucggccAUGCu -3'
miRNA:   3'- agCG-GCCCUGGCgCUCGaaaua---UAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.