miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 29638 0.71 0.811565
Target:  5'- -gGCCGGGgcGCCGCGGGCg-------- -3'
miRNA:   3'- agCGGCCC--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 30112 0.7 0.870163
Target:  5'- gUGCCGGGGCaGCaGAuGCUggcgAUAUACg -3'
miRNA:   3'- aGCGGCCCUGgCG-CU-CGAaa--UAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 30832 0.66 0.970608
Target:  5'- gCGgCGGGGCCGUG-GCUUa------ -3'
miRNA:   3'- aGCgGCCCUGGCGCuCGAAauauaug -5'
6354 3' -52.4 NC_001847.1 + 31096 0.69 0.911631
Target:  5'- gCGCUGGGGCCGgGcAGCgcgGUggcAUGCc -3'
miRNA:   3'- aGCGGCCCUGGCgC-UCGaaaUA---UAUG- -5'
6354 3' -52.4 NC_001847.1 + 31437 0.66 0.972359
Target:  5'- -gGCCGGcGGCCGCG-GCggccccgGCg -3'
miRNA:   3'- agCGGCC-CUGGCGCuCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 31450 0.66 0.967515
Target:  5'- gCGCUGGuGAUCGUGGGCgccAUGgGCg -3'
miRNA:   3'- aGCGGCC-CUGGCGCUCGaaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 32133 0.67 0.944062
Target:  5'- gCGCCGGGGgCGgGGGCgggg---GCg -3'
miRNA:   3'- aGCGGCCCUgGCgCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 32195 0.66 0.970905
Target:  5'- -gGCCGGGGCCcgaggcccGCGGGCggggccgggGCg -3'
miRNA:   3'- agCGGCCCUGG--------CGCUCGaaauaua--UG- -5'
6354 3' -52.4 NC_001847.1 + 32914 0.67 0.948578
Target:  5'- -aGCCGGGGCCGCGGa---------- -3'
miRNA:   3'- agCGGCCCUGGCGCUcgaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 33236 0.68 0.928995
Target:  5'- gCGCCGGGcGCCGCG-GCg-------- -3'
miRNA:   3'- aGCGGCCC-UGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 33756 0.66 0.967515
Target:  5'- aUUGCCGGcGgcGCCGCGGGCa-------- -3'
miRNA:   3'- -AGCGGCC-C--UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 33847 0.69 0.898787
Target:  5'- gUCGCggCGGGAgagaCCGCGGGCUggGgg-GCg -3'
miRNA:   3'- -AGCG--GCCCU----GGCGCUCGAaaUauaUG- -5'
6354 3' -52.4 NC_001847.1 + 33890 0.66 0.973484
Target:  5'- cCGCCGcgcguGGCCGCGGGC-----GUGCa -3'
miRNA:   3'- aGCGGCc----CUGGCGCUCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 35999 0.68 0.923462
Target:  5'- gCGCUgcaGGcGGCCGCGGGCgug--GUGCu -3'
miRNA:   3'- aGCGG---CC-CUGGCGCUCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 37275 0.69 0.884953
Target:  5'- -gGCCGGGGCgGCgucgacugGAGCaUUGUAUAa -3'
miRNA:   3'- agCGGCCCUGgCG--------CUCGaAAUAUAUg -5'
6354 3' -52.4 NC_001847.1 + 38948 0.74 0.682762
Target:  5'- -gGCCcgGGGGCCGCGAGCgccAUGgcgGCg -3'
miRNA:   3'- agCGG--CCCUGGCGCUCGaaaUAUa--UG- -5'
6354 3' -52.4 NC_001847.1 + 39012 0.66 0.97615
Target:  5'- cUCGUCGcGGAgUGCG-GCUaaUAUAUGCu -3'
miRNA:   3'- -AGCGGC-CCUgGCGCuCGAa-AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 40919 0.68 0.939294
Target:  5'- cCGCgCGGGcgccccGCCGCGAGCUc------- -3'
miRNA:   3'- aGCG-GCCC------UGGCGCUCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 41622 0.71 0.829306
Target:  5'- gCGCucCGGGGCCGCcGGGCgagUGgGUGCg -3'
miRNA:   3'- aGCG--GCCCUGGCG-CUCGaa-AUaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 41624 0.67 0.948578
Target:  5'- cCGCCGugauGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGCc---CUGGCGCUCGaaauauaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.