miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 106401 0.69 0.898787
Target:  5'- -gGuCCGGGcCCGCGAGCUUc------ -3'
miRNA:   3'- agC-GGCCCuGGCGCUCGAAauauaug -5'
6354 3' -52.4 NC_001847.1 + 105795 0.79 0.410143
Target:  5'- cCGCCGGGGCCGCGcGCUggAgccGCg -3'
miRNA:   3'- aGCGGCCCUGGCGCuCGAaaUauaUG- -5'
6354 3' -52.4 NC_001847.1 + 105597 0.69 0.884953
Target:  5'- cCGCCGgcggccuccaGGGCCGCGAGCg-------- -3'
miRNA:   3'- aGCGGC----------CCUGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 105108 0.67 0.960651
Target:  5'- gCGgCGGGGCCGcCGGGCggcAUGgGCc -3'
miRNA:   3'- aGCgGCCCUGGC-GCUCGaaaUAUaUG- -5'
6354 3' -52.4 NC_001847.1 + 104829 0.66 0.978615
Target:  5'- cCGCCGGGGggGCGGGCg-------- -3'
miRNA:   3'- aGCGGCCCUggCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 103903 0.72 0.76335
Target:  5'- aCGCCGGGcgccgcgGCCGCGGGCg-------- -3'
miRNA:   3'- aGCGGCCC-------UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 103705 0.68 0.923462
Target:  5'- gCGCCGGGGCCGCcgcGGCc-------- -3'
miRNA:   3'- aGCGGCCCUGGCGc--UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 102659 0.68 0.934272
Target:  5'- gCGCCGGGagcgGCCGCGAGg--------- -3'
miRNA:   3'- aGCGGCCC----UGGCGCUCgaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 102531 0.66 0.978615
Target:  5'- gCGCCGGuGAUCGCGuccaGGCag---AUGCa -3'
miRNA:   3'- aGCGGCC-CUGGCGC----UCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 101504 0.69 0.884953
Target:  5'- gCGCCGGcugcACCGCGGGUgUUUGUcgACc -3'
miRNA:   3'- aGCGGCCc---UGGCGCUCG-AAAUAuaUG- -5'
6354 3' -52.4 NC_001847.1 + 101349 0.68 0.923462
Target:  5'- gCGCCGGGcGCCGCGcGCa-------- -3'
miRNA:   3'- aGCGGCCC-UGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 101160 0.66 0.978615
Target:  5'- -gGCCGGGGCCG-GGGCc-------- -3'
miRNA:   3'- agCGGCCCUGGCgCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 100853 0.66 0.967515
Target:  5'- cUCGCUGacGGCCGCGAGCgcg----GCg -3'
miRNA:   3'- -AGCGGCc-CUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 100650 0.66 0.964198
Target:  5'- gCGCCaGGGCCGCGcuGCUgcg---GCg -3'
miRNA:   3'- aGCGGcCCUGGCGCu-CGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 99088 0.66 0.973484
Target:  5'- gUGCUGGGGCCugucuGCGAGCa-------- -3'
miRNA:   3'- aGCGGCCCUGG-----CGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 98749 0.67 0.948578
Target:  5'- -gGCCGGGGCCG-GGGCa-------- -3'
miRNA:   3'- agCGGCCCUGGCgCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 97467 0.68 0.939294
Target:  5'- gCGCCaGGGCCGCGcGCUa------- -3'
miRNA:   3'- aGCGGcCCUGGCGCuCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 97295 0.68 0.934272
Target:  5'- aCaCCGGGACCGCGGGgCgc---GUGCc -3'
miRNA:   3'- aGcGGCCCUGGCGCUC-GaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 97215 0.7 0.867864
Target:  5'- cUCGCCGGGG-CGCGAGUcgggaccaagcgugUUgucgcggugUAUAUACa -3'
miRNA:   3'- -AGCGGCCCUgGCGCUCG--------------AA---------AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 96657 0.66 0.970608
Target:  5'- nCGCgGGGGCCGgCGGGUacgcgucGUGCg -3'
miRNA:   3'- aGCGgCCCUGGC-GCUCGaaaua--UAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.